Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OE105_RS07945 Genome accession   NZ_CP106877
Coordinates   1649702..1652059 (-) Length   785 a.a.
NCBI ID   WP_275419671.1    Uniprot ID   A0A9E8LXM6
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644702..1657059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS07925 (OE105_07925) - 1645905..1646078 (-) 174 WP_275419667.1 hypothetical protein -
  OE105_RS07930 (OE105_07930) dtd 1646201..1646647 (-) 447 WP_275419668.1 D-aminoacyl-tRNA deacylase -
  OE105_RS07935 (OE105_07935) - 1646659..1648851 (-) 2193 WP_275419669.1 RelA/SpoT family protein -
  OE105_RS07940 (OE105_07940) - 1649199..1649711 (-) 513 WP_275419670.1 adenine phosphoribosyltransferase -
  OE105_RS07945 (OE105_07945) recJ 1649702..1652059 (-) 2358 WP_275419671.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OE105_RS07950 (OE105_07950) secDF 1652182..1654443 (-) 2262 WP_275419672.1 protein translocase subunit SecDF -
  OE105_RS07955 (OE105_07955) - 1654763..1656076 (-) 1314 WP_015865126.1 transposase -
  OE105_RS07960 (OE105_07960) - 1656244..1656561 (-) 318 WP_275419673.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 89831.38 Da        Isoelectric Point: 6.1761

>NTDB_id=736328 OE105_RS07945 WP_275419671.1 1649702..1652059(-) (recJ) [Fervidibacillus halotolerans strain MEBiC13594]
MLQPKTRWILRKGNRENIQQLMEQLELTPLVATLLVNRGIDTVEKAVQFLKDDAFFDPFLLTDMDVCVKRIYEAIKKGQK
MIVYGDYDADGVTSTTVLLVTLKTLGAKVDYYIPDRFLEGYGPNEEAFRFLKDEGVDLIITVDNGIAAIHEAKIAKQLGM
DLIITDHHEPGPELPEAVAVIHPKRPDSTYPFKELAGVGVAFKVASALLRTPPYHLLPLVAIGTIADLVSLTGENRQFVK
KGLELLKGTNHIGLSALMKAAGINQLEIDEETVGFSIAPRMNAPGRLEHANIAVELLLSEDVEEAERLAQEMNEMNRKRQ
EIVNEMEKEAVEEIHRRGLEKDKVLVVGKQNWHPGVIGIVASRLVERFYRPTIVFSYDAEHNLAKGSARSIPGFHLYNNL
RQCKDLLLHFGGHPMAAGMTVEMEKVDRLRDRLNGLATEQLTEEDFIPVTELDGIFSLDTIDLQSLEQMQMLAPFGTDHP
KPKILIKDIQLSNIKKVGADLNHFKFSATDGNHSVDGIGFQMGEIADQLSPLSSVSLIGELGINEWNQVRRPQIYLKDIS
VNEWQLFDYRGHHPLHRWIHKIPEKNRRLILFDERNFSKFGLSEFSQDVRLIHTDEDAKDCPLDEMNIVFLDFPPSENII
TSLIKGKKISRIYAYFYQDGTNYFSTLPTRDHFKWFYLFLVKKGVFDLNRYGKELAKYRGWTTNTVHFMTKVFSELEFVT
INNGIVTVCEIQKKRDLSESPTYQRIQEEVRLEKLLLYSPYRDLKQWFDHYLPIGKIKEEKIIWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=736328 OE105_RS07945 WP_275419671.1 1649702..1652059(-) (recJ) [Fervidibacillus halotolerans strain MEBiC13594]
ATGCTACAGCCAAAGACACGATGGATACTGAGAAAAGGGAATCGTGAAAACATACAACAACTAATGGAACAGCTGGAATT
AACACCTCTTGTTGCTACTTTACTTGTCAATCGAGGAATCGATACGGTTGAAAAAGCTGTTCAGTTTTTAAAAGATGATG
CTTTTTTCGATCCATTTTTATTAACTGATATGGATGTTTGTGTTAAGCGAATTTATGAGGCGATCAAAAAGGGCCAGAAA
ATGATCGTCTACGGTGATTATGATGCCGATGGAGTGACGAGTACGACCGTATTGCTCGTTACATTGAAGACGTTAGGAGC
GAAGGTGGATTATTACATACCGGATCGATTTTTGGAAGGATATGGACCGAATGAGGAGGCGTTCCGCTTTTTAAAAGATG
AAGGGGTCGACCTAATTATTACCGTTGATAACGGAATTGCTGCCATACATGAAGCGAAAATTGCAAAACAACTCGGAATG
GACTTGATTATTACCGATCATCATGAACCAGGTCCCGAACTTCCGGAGGCTGTAGCCGTTATTCATCCGAAACGTCCCGA
TTCAACCTATCCATTTAAAGAATTAGCCGGGGTCGGGGTTGCCTTTAAAGTGGCTAGTGCTCTACTGCGTACCCCACCTT
ATCATCTCCTTCCCCTCGTTGCAATCGGAACCATCGCCGATCTCGTTTCGCTTACTGGAGAAAATCGTCAATTTGTCAAA
AAGGGATTAGAATTATTAAAAGGAACGAACCATATTGGACTTTCCGCCTTGATGAAAGCAGCGGGAATTAACCAACTTGA
AATTGACGAAGAAACGGTCGGTTTTAGTATTGCCCCGAGGATGAATGCACCCGGGAGATTAGAACATGCAAATATAGCCG
TTGAACTTCTTTTATCTGAAGACGTCGAAGAAGCTGAACGACTGGCACAAGAAATGAACGAAATGAACCGTAAAAGACAG
GAAATTGTAAATGAAATGGAAAAGGAAGCCGTTGAAGAGATTCATCGGAGGGGACTTGAAAAGGATAAAGTTCTTGTTGT
CGGAAAACAGAATTGGCATCCGGGGGTAATAGGTATTGTCGCTTCCAGACTTGTGGAAAGATTTTACCGACCAACCATCG
TTTTCTCTTATGATGCTGAACACAACTTGGCTAAAGGTTCAGCGAGAAGTATACCGGGTTTTCATTTATACAATAATCTT
CGCCAATGTAAGGATTTATTGCTTCATTTCGGAGGTCATCCAATGGCAGCTGGAATGACGGTTGAAATGGAAAAGGTGGA
TCGTTTGCGGGATCGATTAAACGGACTAGCAACCGAACAATTAACGGAGGAAGACTTTATCCCTGTTACCGAATTGGATG
GGATCTTTTCTTTGGACACAATCGATCTCCAAAGTCTTGAGCAAATGCAAATGCTTGCGCCCTTTGGTACTGATCATCCA
AAACCAAAAATTTTAATTAAAGATATTCAATTATCGAACATAAAAAAAGTAGGAGCCGATTTGAATCATTTTAAATTTTC
AGCAACAGATGGAAACCATTCGGTAGATGGCATTGGCTTTCAAATGGGAGAAATCGCAGATCAGCTATCCCCTTTATCGA
GCGTATCTCTCATCGGAGAATTGGGAATCAACGAATGGAACCAAGTTCGGAGGCCCCAAATCTATTTAAAAGACATTTCT
GTCAATGAGTGGCAATTGTTTGATTATCGCGGCCATCATCCCCTACATCGTTGGATCCATAAAATACCTGAAAAAAATCG
ACGGTTGATTTTATTTGATGAACGCAACTTTTCTAAATTCGGATTGTCCGAATTCTCCCAGGACGTAAGGCTAATCCATA
CGGATGAAGATGCGAAGGATTGCCCATTGGACGAAATGAATATTGTATTTTTAGATTTTCCCCCTTCAGAAAACATCATA
ACATCATTGATTAAAGGCAAAAAGATATCACGAATTTACGCTTATTTTTACCAAGACGGAACGAATTATTTTAGTACTCT
ACCGACGAGGGACCATTTCAAATGGTTTTACTTGTTTCTTGTTAAAAAGGGAGTATTCGATTTGAATCGGTATGGAAAGG
AACTAGCAAAATATCGAGGATGGACAACAAATACCGTCCATTTTATGACAAAGGTGTTTTCTGAATTGGAATTTGTTACA
ATAAATAATGGGATTGTAACCGTATGCGAAATTCAGAAAAAAAGGGATTTGTCGGAATCTCCAACCTATCAAAGAATACA
AGAGGAAGTTCGATTGGAGAAGCTACTGTTATATTCCCCATATCGAGATTTGAAACAATGGTTCGATCATTATTTACCCA
TTGGAAAGATTAAGGAGGAAAAAATCATATGGATTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(313-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(565-768)

RecJ OB domain (RecJ_OB)

(453-558)

DHH family (DHH)

(80-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.517

98.599

0.498