Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OE105_RS07880 Genome accession   NZ_CP106877
Coordinates   1634601..1636931 (-) Length   776 a.a.
NCBI ID   WP_275422135.1    Uniprot ID   A0A9E8S1W7
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1629601..1641931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS07865 (OE105_07865) alaS 1629909..1632542 (-) 2634 WP_275419659.1 alanine--tRNA ligase -
  OE105_RS07870 (OE105_07870) - 1632887..1633951 (-) 1065 WP_275419660.1 AI-2E family transporter -
  OE105_RS07875 (OE105_07875) - 1634087..1634284 (-) 198 WP_275422134.1 hypothetical protein -
  OE105_RS07880 (OE105_07880) recD2 1634601..1636931 (-) 2331 WP_275422135.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OE105_RS07885 (OE105_07885) mnmA 1637098..1638174 (-) 1077 WP_275422136.1 tRNA 2-thiouridine(34) synthase MnmA -
  OE105_RS07890 (OE105_07890) - 1638224..1639366 (-) 1143 WP_275419661.1 cysteine desulfurase family protein -
  OE105_RS07895 (OE105_07895) cymR 1639437..1639859 (-) 423 WP_275419662.1 cysteine metabolism transcriptional regulator CymR -
  OE105_RS07900 (OE105_07900) - 1640005..1641291 (+) 1287 WP_275419663.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 88108.21 Da        Isoelectric Point: 5.4480

>NTDB_id=736327 OE105_RS07880 WP_275422135.1 1634601..1636931(-) (recD2) [Fervidibacillus halotolerans strain MEBiC13594]
MKGRPIVTIFHNEQNLYTVLKIKVEETSENYTEKNAVVTGYFPKLHSEEQYVFYGTLKKHPKYGLQFVSTHYRKDMPKTK
QGIIQYLSSELFKGIGKKTAEKIVETLGEDAISRILENPSLLDTVPKLSSDKAKLLYDKLVEHQGLEKVMVALNEYGFGP
QLAIKIYQTYKEKTLEIITNNPYRLVEDVEGIGFGRADELGFKLGIQGNHPDRIKAGCLYKLETDCLQEGHSFLYREALL
SSVKKLLETNQYIEIPLENIDNELLKLEEEGKIIVEEDRIYIPSIFFSEKGLTTKIKQILAQRDYEDQFPDSEFFIALGE
LEDRLGIDYAPSQRKAIQTALLSPMLILTGGPGTGKTTVIKGIVELYAQLHGLSLNPNDYRGDEPFPIILAAPTGRAAKR
MSESTGLPAVTIHRLLGWNGVESFEFNEDNPIDGRLIIIDEMSMVDIWLAHHLFKALPEKIQVVLVGDEDQLPSVGPGQV
LKDLLASNVIPTVRLTDIYRQENGSSIVELAHQIKNGTIPPDLRIQRKDRSFIRCTTAQMADVIKQIVTLIKEKGFTKRD
IQVLAPMYRGPAGIDQLNQILQELLNPNSDRKKRELAFSEVTYRVGDKVLQLVNRPENQVFNGDIGEIVAIFYSKENEEK
QDQLVVSYDGNEVIYTKQDLNQITLAYCCSIHKSQGSEFPIVILPVVRGYYRMLRRNLIYTAVTRSKNKLILCGEEEAFQ
LAVMRTDDSLRNSSLKERLMSKIEQPDSLLSYEEELMKTDPMIGMGNTTPYDFLDY

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=736327 OE105_RS07880 WP_275422135.1 1634601..1636931(-) (recD2) [Fervidibacillus halotolerans strain MEBiC13594]
ATGAAAGGTCGTCCGATCGTAACGATCTTTCATAATGAACAAAATTTGTATACGGTATTGAAAATAAAAGTAGAGGAAAC
AAGTGAAAACTACACGGAAAAAAATGCGGTTGTGACTGGTTACTTTCCAAAGCTCCATTCCGAAGAACAGTACGTTTTTT
ACGGGACGTTAAAAAAACATCCAAAATATGGTCTCCAATTTGTTTCCACCCATTATCGCAAAGATATGCCAAAAACAAAA
CAAGGGATTATTCAATATTTATCCAGTGAATTATTTAAAGGAATCGGCAAGAAAACAGCAGAAAAGATCGTGGAGACGTT
AGGTGAAGATGCGATTTCCCGTATTTTGGAAAACCCGTCCCTATTGGATACGGTCCCAAAATTATCTTCGGATAAGGCGA
AACTCCTCTATGACAAACTCGTGGAACACCAAGGACTGGAGAAAGTAATGGTCGCTTTGAACGAATACGGGTTCGGTCCC
CAACTGGCAATCAAAATTTATCAAACTTACAAAGAAAAAACGTTAGAAATCATTACAAACAATCCTTATAGACTTGTGGA
AGATGTGGAGGGAATCGGCTTTGGCCGGGCGGATGAACTCGGATTTAAACTCGGTATTCAAGGGAATCATCCAGATCGAA
TAAAAGCGGGTTGTCTATATAAATTGGAAACCGATTGTCTTCAAGAAGGGCATTCCTTTTTATATCGTGAAGCCCTCCTT
TCCTCTGTGAAAAAACTGTTGGAAACGAATCAATATATTGAAATCCCTTTGGAAAATATCGATAATGAATTACTGAAATT
GGAAGAAGAAGGGAAAATAATCGTTGAGGAAGATCGAATTTATATCCCATCGATTTTCTTTTCTGAAAAGGGGCTTACGA
CGAAAATAAAACAAATACTTGCTCAAAGGGACTATGAAGATCAATTTCCAGACTCGGAGTTTTTCATCGCCCTTGGTGAG
TTGGAGGACCGATTAGGCATCGACTATGCACCTTCACAAAGAAAAGCGATCCAAACGGCCCTTTTGTCCCCAATGCTTAT
TTTGACAGGTGGACCAGGGACGGGAAAGACGACAGTCATTAAAGGAATTGTTGAATTATATGCCCAACTTCACGGGCTTT
CATTGAATCCGAACGATTATAGGGGAGATGAACCCTTTCCCATTATTTTAGCTGCTCCGACAGGTCGAGCGGCAAAACGA
ATGAGTGAATCGACCGGACTTCCAGCGGTAACGATTCATCGTTTACTCGGTTGGAACGGTGTAGAATCCTTTGAATTTAA
TGAGGACAATCCAATTGACGGACGATTGATTATCATTGATGAAATGTCCATGGTTGATATTTGGCTAGCCCATCATTTAT
TTAAAGCTTTACCTGAAAAGATTCAAGTCGTCCTCGTCGGGGATGAAGATCAACTTCCTTCCGTTGGTCCAGGACAAGTA
TTGAAAGATTTACTAGCATCTAACGTAATCCCAACTGTTCGTTTGACGGATATATATAGGCAAGAAAACGGATCTTCCAT
CGTCGAATTAGCCCATCAAATCAAAAATGGAACGATTCCTCCTGACTTACGGATTCAAAGGAAGGATCGGTCGTTTATCC
GTTGCACAACCGCACAAATGGCAGATGTGATTAAGCAAATTGTCACCTTAATAAAGGAAAAGGGATTTACGAAACGGGAT
ATTCAAGTTTTAGCTCCTATGTATCGTGGTCCTGCTGGAATCGACCAATTGAATCAAATTTTGCAAGAATTGTTAAATCC
AAATTCGGATAGGAAAAAGCGAGAGTTGGCCTTTAGTGAAGTAACATATCGTGTTGGCGATAAAGTACTTCAACTGGTGA
ATCGGCCGGAAAACCAAGTTTTTAACGGAGATATTGGCGAAATTGTAGCAATCTTTTACAGTAAGGAAAATGAAGAGAAA
CAGGATCAATTGGTCGTTTCCTATGATGGAAATGAGGTTATATATACGAAGCAAGATTTGAATCAAATTACATTGGCTTA
TTGTTGCAGTATTCATAAGTCTCAAGGAAGTGAATTTCCAATTGTCATTTTACCTGTCGTCCGAGGGTATTATCGCATGT
TACGTCGAAATTTGATTTATACGGCTGTAACTCGTAGTAAAAATAAATTAATCCTTTGTGGAGAAGAGGAAGCCTTTCAA
TTGGCCGTTATGCGTACCGATGATTCTCTGCGAAATTCCTCGTTAAAGGAAAGGTTAATGTCGAAGATCGAACAGCCCGA
CTCCCTATTATCCTACGAAGAGGAATTGATGAAAACTGATCCAATGATTGGCATGGGAAATACTACACCGTATGATTTTT
TAGATTATTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-648)

AAA domain (AAA_30)

(329-537)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(666-713)

Helix-hairpin-helix containing domain (HHH_RecD2)

(142-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.232

100

0.615