Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   P8R98_RS08765 Genome accession   NZ_CP121159
Coordinates   1782517..1783302 (-) Length   261 a.a.
NCBI ID   WP_000825433.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1777517..1788302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS08740 - 1778255..1779139 (+) 885 WP_161501821.1 LysR family transcriptional regulator -
  P8R98_RS08745 - 1779176..1779994 (-) 819 WP_000601005.1 hypothetical protein -
  P8R98_RS08750 fetB 1780158..1780931 (-) 774 WP_000011928.1 iron export ABC transporter permease subunit FetB -
  P8R98_RS08755 - 1780928..1781584 (-) 657 WP_000121096.1 ATP-binding cassette domain-containing protein -
  P8R98_RS08760 - 1781801..1782439 (+) 639 WP_000478529.1 VTT domain-containing protein -
  P8R98_RS08765 endA 1782517..1783302 (-) 786 WP_000825433.1 DNA/RNA non-specific endonuclease Machinery gene
  P8R98_RS08770 - 1783562..1785007 (+) 1446 WP_278043431.1 FAD/NAD(P)-binding protein -
  P8R98_RS08775 - 1785064..1785735 (-) 672 WP_000891266.1 ABC transporter ATP-binding protein -
  P8R98_RS08780 - 1785832..1786263 (-) 432 WP_350355552.1 FtsX-like permease family protein -
  P8R98_RS11835 - 1786474..1787184 (-) 711 Protein_1691 ABC transporter permease -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29378.79 Da        Isoelectric Point: 8.9989

>NTDB_id=736149 P8R98_RS08765 WP_000825433.1 1782517..1783302(-) (endA) [Streptococcus agalactiae strain S1]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSAANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=736149 P8R98_RS08765 WP_000825433.1 1782517..1783302(-) (endA) [Streptococcus agalactiae strain S1]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAGACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAGCTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395