Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OCI51_RS17315 Genome accession   NZ_CP106862
Coordinates   3344541..3346973 (-) Length   810 a.a.
NCBI ID   WP_263082167.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain FN9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3339541..3351973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCI51_RS17305 (OCI51_17305) corA 3341551..3342516 (-) 966 WP_257520233.1 magnesium/cobalt transporter CorA -
  OCI51_RS17310 (OCI51_17310) hpaB 3342984..3344417 (-) 1434 WP_257520234.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  OCI51_RS17315 (OCI51_17315) recD2 3344541..3346973 (-) 2433 WP_263082167.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OCI51_RS17320 (OCI51_17320) hisA 3347163..3347930 (+) 768 WP_257520235.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  OCI51_RS17325 (OCI51_17325) - 3347927..3348214 (+) 288 WP_202341276.1 hypothetical protein -
  OCI51_RS17330 (OCI51_17330) - 3349065..3349813 (+) 749 Protein_3412 GTP pyrophosphokinase family protein -
  OCI51_RS17335 (OCI51_17335) - 3349902..3351347 (-) 1446 WP_257520236.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90723.06 Da        Isoelectric Point: 4.8359

>NTDB_id=736148 OCI51_RS17315 WP_263082167.1 3344541..3346973(-) (recD2) [Lysinibacillus capsici strain FN9]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGVGKKTAETIVEKLGANALRVILEDPNALDAVPRLSAEKKEVIHRTIEQNLGL
ERIMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNIKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGNEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVSVENEVTQEPVSIEQKLTVETAPFIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=736148 OCI51_RS17315 WP_263082167.1 3344541..3346973(-) (recD2) [Lysinibacillus capsici strain FN9]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAAATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGACGAACAATATCGATTTACTGGTATTTTAAAACAACATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACGAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGGTCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCGAATGCACTCCGTGTTATTTTAGAAGATCCTA
ATGCCCTCGATGCTGTTCCGCGTCTATCTGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGTTTA
GAGCGGATCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGCATGAAAATTTATCAAACCTATAGAACAGA
AGCCATTGAATTACTGACAGAGAATCCATACCGCTTAATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCTGATGAGC
TAGGTGCAAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCAGATGGACATGTCTATCTAGATGCAGAACATGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAAGATATTTCTCAAGCCTGCATCGGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTACCGTCACTGTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCCCTTATCGAACGGAATATTAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATTGAGCAGGCTTTAAATTCAGCTGTTATGATATTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTGTATGCAAAGCTTCATGGCCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTACCTGCGATGACCAT
TCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAAGTGACAGGTAAGCTGATTATCGTGG
ATGAAATGTCCATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTA
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAAGATTTATTAGCATCCAAGCAGCTACCAACCGT
CGAGCTAACAGATGTTTACCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCCCATCAAATAAAAAAAGGAACGATTC
CAAAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCCGATCAAGTTGCCAACGTTGTAACACAG
GTTGTCAAAAGTGCTGTCGCAAAAGGTCAGGAAATCCGTAATATCCAAGTGTTGGCACCCATGTATAAAGGACCAGCTGG
GATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCAAATGATACTGGAACACGAAAAGAGCTAGTCTTTGGGG
ATGTAACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCAGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGGTCGAAAAACAAGATTTATTGATCGTATCCTTTGATGGCAATGAAGT
GACCTATCAACGAAGCGATCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTACTTGCAGATGGTTTACAACGTACAGATGACCTACAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGTCAGTTGAAAATGAAG
TGACGCAGGAGCCTGTTTCCATTGAACAAAAGCTAACAGTAGAAACAGCCCCTTTTATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCCTATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.328

100

0.527