Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P8R98_RS03495 Genome accession   NZ_CP121159
Coordinates   676987..677772 (+) Length   261 a.a.
NCBI ID   WP_001133183.1    Uniprot ID   P63847
Organism   Streptococcus agalactiae strain S1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 671987..682772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS03475 - 672462..673424 (-) 963 WP_000723060.1 asparaginase -
  P8R98_RS03480 - 673493..674875 (+) 1383 WP_000974895.1 HAD-IIB family hydrolase -
  P8R98_RS03485 - 674931..675383 (-) 453 WP_000080032.1 universal stress protein -
  P8R98_RS03490 - 675650..676861 (+) 1212 WP_000688108.1 pyridoxal phosphate-dependent aminotransferase -
  P8R98_RS03495 codY 676987..677772 (+) 786 WP_001133183.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P8R98_RS03500 - 677839..678387 (+) 549 WP_000158744.1 isochorismatase family cysteine hydrolase -
  P8R98_RS03505 - 678434..679399 (-) 966 WP_000153114.1 3-hydroxyacyl-CoA dehydrogenase -
  P8R98_RS03510 - 679588..680217 (+) 630 WP_011074751.1 helix-turn-helix transcriptional regulator -
  P8R98_RS03515 - 680228..681058 (+) 831 WP_000390093.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28972.08 Da        Isoelectric Point: 4.4520

>NTDB_id=736112 P8R98_RS03495 WP_001133183.1 676987..677772(+) (codY) [Streptococcus agalactiae strain S1]
MPNLLEKTRKITSILQRSVDSLDAELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPDYYV
KSASRVYDTEANLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=736112 P8R98_RS03495 WP_001133183.1 676987..677772(+) (codY) [Streptococcus agalactiae strain S1]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGCCGAATTACC
ATATAATACAATGGCGGCTCAACTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCAGATTACTATGTT
AAATCTGCTAGTCGTGTTTATGATACAGAAGCTAACTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACAATGGCTATCAACACTCTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGAATTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGCCGCTCACTCGGT
ATGAAGGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63847

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.433

100

0.674
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49