Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   P6F23_RS08795 Genome accession   NZ_CP120953
Coordinates   1720657..1723077 (+) Length   806 a.a.
NCBI ID   WP_000451615.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1715657..1728077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS08775 (P6F23_08775) - 1718059..1718601 (-) 543 WP_000949954.1 CvpA family protein -
  P6F23_RS08780 (P6F23_08780) zapA 1718604..1718915 (-) 312 WP_000448289.1 cell division protein ZapA -
  P6F23_RS08785 (P6F23_08785) rnhC 1719026..1719919 (+) 894 WP_001092534.1 ribonuclease HIII -
  P6F23_RS08790 (P6F23_08790) lepB 1719935..1720528 (+) 594 WP_000657514.1 signal peptidase I -
  P6F23_RS08795 (P6F23_08795) recD/recD2/recDB 1720657..1723077 (+) 2421 WP_000451615.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P6F23_RS08800 (P6F23_08800) - 1723191..1723673 (+) 483 WP_000255475.1 hypothetical protein -
  P6F23_RS08805 (P6F23_08805) dinB 1723744..1724838 (-) 1095 WP_000904560.1 DNA polymerase IV -
  P6F23_RS08810 (P6F23_08810) pflB 1725023..1727335 (+) 2313 WP_000246712.1 formate C-acetyltransferase -
  P6F23_RS08815 (P6F23_08815) - 1727436..1727810 (+) 375 WP_000931880.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91019.46 Da        Isoelectric Point: 4.7227

>NTDB_id=735491 P6F23_RS08795 WP_000451615.1 1720657..1723077(+) (recD/recD2/recDB) [Streptococcus agalactiae strain GBSIR0001]
MEVFFTGTIERIIFENASNFFKILLLEIEDTDSDFDDVEVIITGTMADVIEGEEYTFWGTLTQHPKYGEQLQSVRYERAK
PTSGGLVKYFSSEQFKGIGKKTAQRIVELYGDNTIDKILESPEQLSTISGLSKINREAFIAKLKLNYGTEQVLAKLAEYG
LSNRAAIQIFDHYKEESLEVINENPYQLVEDIQGIGFKIADQLAEQVGIESDSPKRFRAAIIHTLVESSMEQGDTYIEAR
TLLEKTITLLEEVRQIELDPSIVAKELTNLIAEDKVQHIGTKIFSNTLFFAEEGIKKNLQRILNQPLDKQLSHKDIDREI
RDIQKSLNIHYDNIQEKAIREALLSKVFILTGGPGTGKTTVINGIIEAYSELHHIDLNKNDIPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSDYQSLDDYLDCSLIIIDEFSMVDTWLANQLFDALDSHTQVIIVGDSDQLPSVGPGQVLADLL
NINALPHIKLEKIFRQSEESTIVTLANQMRQGFLPEDFTAKKADRSYFEASANIIPNMISKIVQSALKSGIEAHEIQILA
PMYRGQAGINNLNLIMQNLLNPLKDNNQFTFNDINFRIGDKVLHLVNDTELNVFNGDIGYITDLIPAKYTESKQDEIYMT
FDGQEVIYQRKEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAITRSKSKLILLGEIGAFDFAVKNEG
AKRNTYLIERFENKQEIANSQKIEDSSIDQKIDNTIINTSIPKTATPIEQTNLSKITYRLTEENYLTIDPMIGINQQDIS
AIFDSK

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=735491 P6F23_RS08795 WP_000451615.1 1720657..1723077(+) (recD/recD2/recDB) [Streptococcus agalactiae strain GBSIR0001]
ATGGAAGTATTTTTTACAGGAACCATTGAACGCATTATATTTGAAAATGCCAGCAATTTTTTTAAAATATTACTTCTGGA
AATCGAAGATACGGATAGCGATTTTGATGATGTAGAAGTAATTATTACTGGTACTATGGCCGACGTTATAGAGGGAGAAG
AATATACTTTTTGGGGAACACTAACCCAACATCCAAAATACGGCGAGCAACTACAAAGTGTACGCTATGAAAGAGCCAAG
CCTACTTCAGGTGGCCTTGTGAAATACTTTTCTAGCGAACAATTTAAAGGAATTGGTAAAAAGACTGCCCAACGCATCGT
AGAACTCTATGGAGATAATACCATTGATAAAATCCTTGAATCCCCTGAACAGTTAAGTACAATCTCAGGACTATCAAAAA
TTAATAGAGAAGCATTCATCGCTAAACTGAAACTCAATTATGGAACAGAGCAAGTTTTAGCTAAACTCGCTGAATATGGG
TTAAGCAATCGTGCTGCTATTCAAATATTTGATCACTATAAAGAAGAATCACTTGAAGTGATAAACGAAAATCCTTATCA
ACTTGTTGAGGATATCCAAGGTATCGGTTTTAAAATAGCTGACCAACTTGCTGAACAAGTCGGTATTGAAAGTGATTCTC
CTAAACGCTTTCGTGCTGCTATTATTCATACTTTAGTTGAGTCTTCTATGGAGCAAGGAGATACCTATATTGAGGCTCGT
ACTCTCTTGGAAAAAACCATTACTCTCCTTGAAGAAGTTCGTCAAATCGAACTAGATCCTTCAATTGTTGCTAAGGAATT
GACAAATTTAATTGCAGAAGATAAAGTGCAACATATTGGAACTAAAATTTTTAGTAATACTCTATTTTTTGCCGAAGAAG
GCATCAAAAAAAACTTACAACGAATACTAAATCAGCCTCTTGATAAACAACTAAGTCACAAAGATATTGACCGTGAAATC
AGAGATATTCAAAAATCTTTAAATATCCACTACGATAATATCCAAGAAAAAGCTATTAGAGAAGCTTTACTAAGTAAGGT
ATTTATCTTGACTGGTGGCCCAGGAACAGGTAAAACAACAGTTATAAATGGTATTATTGAAGCCTATTCCGAGTTACATC
ATATTGATTTAAACAAAAATGATATTCCTATTGTACTTGCTGCTCCTACAGGTCGTGCTGCTAGACGCATGAATGAACTT
ACCGGTTTACCGAGTGCTACTATTCATAGGCATTTGGGATTAAACGGAGATAGTGACTATCAAAGTCTAGATGACTATCT
AGATTGTTCCTTAATTATCATTGATGAATTTTCAATGGTTGACACTTGGCTTGCTAATCAATTATTTGACGCTTTGGACT
CGCACACACAAGTTATTATTGTCGGAGATAGTGATCAATTACCGTCTGTAGGTCCAGGACAAGTTCTAGCAGATCTTTTA
AATATAAATGCACTTCCACACATTAAACTTGAAAAGATTTTTAGACAATCAGAAGAATCAACTATTGTGACTTTAGCTAA
TCAAATGAGACAGGGCTTTTTGCCAGAGGACTTTACAGCTAAAAAAGCCGATCGCTCATACTTTGAAGCATCTGCTAATA
TCATCCCAAATATGATTTCTAAAATTGTTCAATCTGCACTTAAGAGCGGTATTGAAGCTCATGAAATTCAAATTTTAGCT
CCTATGTATCGCGGCCAAGCAGGTATTAATAATCTTAACCTTATCATGCAAAATCTCCTCAATCCATTAAAAGATAATAA
CCAATTTACTTTTAATGATATAAATTTCCGAATAGGAGATAAAGTGTTACATTTAGTCAACGATACAGAGCTTAATGTTT
TTAATGGGGATATTGGTTACATAACGGACCTTATACCAGCTAAATATACTGAGAGCAAGCAAGATGAGATTTATATGACT
TTTGATGGTCAAGAAGTTATCTACCAACGCAAAGAATGGCTTAAAATAACACTAGCCTATGCTATGAGTATTCATAAATC
ACAGGGTTCTGAATTTCAAGTTGTTATTCTGCCAATAACGAGACAGAGTGGTCGAATGTTACAGCGAAACCTTATTTATA
CAGCTATTACGAGATCTAAAAGTAAACTAATACTTTTAGGAGAAATTGGTGCATTTGATTTCGCTGTTAAAAACGAGGGG
GCAAAGCGCAATACTTATCTGATAGAAAGATTTGAAAACAAGCAAGAAATAGCTAATTCTCAAAAAATTGAAGATAGCTC
AATAGATCAAAAGATTGACAACACAATAATTAATACGTCCATTCCAAAAACAGCAACACCAATTGAGCAGACTAATCTTT
CAAAAATAACTTATCGCCTAACTGAAGAAAATTATTTAACAATCGATCCAATGATTGGTATTAATCAACAAGATATAAGT
GCAATTTTTGATAGTAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.658

92.928

0.406