Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   P6F23_RS03850 Genome accession   NZ_CP120953
Coordinates   689597..690382 (+) Length   261 a.a.
NCBI ID   WP_000825430.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 684597..695382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS03820 (P6F23_03820) - 685714..686154 (+) 441 Protein_669 hypothetical protein -
  P6F23_RS03825 (P6F23_03825) - 686242..686508 (+) 267 WP_001865676.1 hypothetical protein -
  P6F23_RS03830 (P6F23_03830) - 686609..686737 (+) 129 WP_000962057.1 hypothetical protein -
  P6F23_RS03835 (P6F23_03835) - 686746..687066 (+) 321 WP_001865677.1 hypothetical protein -
  P6F23_RS03840 (P6F23_03840) - 687163..687834 (+) 672 WP_000891267.1 ABC transporter ATP-binding protein -
  P6F23_RS03845 (P6F23_03845) - 687891..689336 (-) 1446 WP_000750933.1 FAD/NAD(P)-binding protein -
  P6F23_RS03850 (P6F23_03850) endA 689597..690382 (+) 786 WP_000825430.1 DNA/RNA non-specific endonuclease Machinery gene
  P6F23_RS03855 (P6F23_03855) - 690460..691098 (-) 639 WP_000478529.1 VTT domain-containing protein -
  P6F23_RS03860 (P6F23_03860) - 691315..691971 (+) 657 WP_000121094.1 ATP-binding cassette domain-containing protein -
  P6F23_RS03865 (P6F23_03865) fetB 691968..692741 (+) 774 WP_000011926.1 iron export ABC transporter permease subunit FetB -
  P6F23_RS03870 (P6F23_03870) - 692905..693723 (+) 819 WP_286631496.1 phosphate ABC transporter ATPase -
  P6F23_RS03875 (P6F23_03875) - 693760..694644 (-) 885 WP_000354840.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29396.85 Da        Isoelectric Point: 8.9927

>NTDB_id=735447 P6F23_RS03850 WP_000825430.1 689597..690382(+) (endA) [Streptococcus agalactiae strain GBSIR0001]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRLSTANAMLDKTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=735447 P6F23_RS03850 WP_000825430.1 689597..690382(+) (endA) [Streptococcus agalactiae strain GBSIR0001]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACGCCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAGACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACTATCAACTGCTAATGCAATGCTTGA
TAAAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGT
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATACACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395