Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OEJ84_RS12205 Genome accession   NZ_CP106791
Coordinates   2340402..2341022 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 23-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335402..2346022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEJ84_RS12165 (OEJ84_12165) ptsA 2336533..2337039 (-) 507 WP_009967573.1 PTS glucose transporter subunit IIA -
  OEJ84_RS12170 (OEJ84_12170) ypqA 2337177..2337596 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  OEJ84_RS12175 (OEJ84_12175) sppG 2337617..2337994 (-) 378 WP_004398696.1 YppG family protein -
  OEJ84_RS12180 (OEJ84_12180) yppF 2338182..2338370 (+) 189 WP_003230690.1 YppF family protein -
  OEJ84_RS12185 (OEJ84_12185) yppE 2338409..2338780 (-) 372 WP_003246080.1 YppE family protein -
  OEJ84_RS12190 (OEJ84_12190) yppD 2338826..2339071 (-) 246 WP_004398488.1 YppD family protein -
  OEJ84_RS12195 (OEJ84_12195) sspM 2339270..2339374 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  OEJ84_RS12200 (OEJ84_12200) yppC 2339399..2340361 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  OEJ84_RS12205 (OEJ84_12205) recU 2340402..2341022 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  OEJ84_RS12210 (OEJ84_12210) ponA 2341044..2343788 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  OEJ84_RS12215 (OEJ84_12215) ypoC 2343864..2344358 (-) 495 WP_009967579.1 YpoC family protein -
  OEJ84_RS12220 (OEJ84_12220) nth 2344355..2345014 (-) 660 WP_009967580.1 endonuclease III -
  OEJ84_RS12225 (OEJ84_12225) dnaD 2345033..2345731 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=735243 OEJ84_RS12205 WP_004399067.1 2340402..2341022(+) (recU) [Bacillus subtilis strain 23-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=735243 OEJ84_RS12205 WP_004399067.1 2340402..2341022(+) (recU) [Bacillus subtilis strain 23-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1