Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE38_RS10145 Genome accession   NZ_CP106777
Coordinates   1932102..1932623 (-) Length   173 a.a.
NCBI ID   WP_263071069.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1927102..1937623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE38_RS10115 (LLE38_10115) - 1928718..1929002 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE38_RS10120 (LLE38_10120) pilC 1929910..1930446 (-) 537 WP_263071067.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE38_RS12115 pilC 1930446..1931236 (-) 791 Protein_1952 PilC family type IV pilus tip adhesin -
  LLE38_RS12120 - 1931125..1931370 (-) 246 WP_406946870.1 hypothetical protein -
  LLE38_RS10140 (LLE38_10140) pilC 1931367..1931507 (-) 141 WP_263071068.1 pilus assembly protein Machinery gene
  LLE38_RS10145 (LLE38_10145) pilC 1932102..1932623 (-) 522 WP_263071069.1 hypothetical protein Machinery gene
  LLE38_RS10150 (LLE38_10150) pilC 1932884..1933012 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE38_RS10155 (LLE38_10155) - 1933699..1933962 (+) 264 WP_229433460.1 hypothetical protein -
  LLE38_RS10160 (LLE38_10160) gnd 1934042..1935490 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  LLE38_RS10165 (LLE38_10165) waaA 1935553..1936824 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LLE38_RS10170 (LLE38_10170) - 1936865..1937314 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19719.05 Da        Isoelectric Point: 9.9302

>NTDB_id=734953 LLE38_RS10145 WP_263071069.1 1932102..1932623(-) (pilC) [Neisseria gonorrhoeae strain 10727]
MDSYHPPGWQATPTPTSYAETQSDPQLVYETKFAFGQQGLQRNGNKLDIYEDKSRDNSPIYKLKDYPWLGVSFNLGSENT
VKNGRSSGRLISSFSENNNNQTIVSTTRDRPISLGDRQREHTAVACYLNAKLHLLDKKGLKISPKAKQWIWHLKTARRDD
RTKLAKLSGYVED

Nucleotide


Download         Length: 522 bp        

>NTDB_id=734953 LLE38_RS10145 WP_263071069.1 1932102..1932623(-) (pilC) [Neisseria gonorrhoeae strain 10727]
TTGGATTCGTACCACCCGCCCGGCTGGCAGGCTACGCCTACACCGACGTCATATGCAGAGACGCAGAGCGATCCCCAACT
TGTCTATGAGACCAAATTTGCCTTCGGTCAACAAGGGTTGCAAAGAAATGGCAACAAGCTGGATATATACGAAGACAAAA
GCCGCGACAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACC
GTCAAAAATGGCAGATCATCCGGCAGATTGATATCTTCTTTTAGTGAAAACAATAATAATCAAACCATCGTCTCTACGAC
ACGAGACCGCCCTATTTCCCTTGGCGACCGGCAGCGCGAACATACCGCCGTGGCCTGTTATCTGAACGCCAAGCTGCACC
TGCTGGACAAAAAAGGATTAAAGATATCGCCCAAGGCAAAACAGTGGATTTGGCACCTTAAGACCGCGCGTCGAGACGAC
AGGACGAAACTGGCTAAGTTATCGGGCTACGTGGAAGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

73.504

67.63

0.497