Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P4833_RS30230 Genome accession   NZ_CP120871
Coordinates   6417602..6418198 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PACL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6412602..6423198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4833_RS30210 (P4833_30165) aroK 6413733..6414251 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P4833_RS30215 (P4833_30170) pilQ 6414263..6416407 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  P4833_RS30220 (P4833_30175) comL/pilP 6416461..6416985 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P4833_RS30225 (P4833_30180) pilO 6416982..6417605 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P4833_RS30230 (P4833_30185) pilN 6417602..6418198 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P4833_RS30235 (P4833_30190) pilM 6418198..6419262 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P4833_RS30240 (P4833_30195) - 6419447..6421920 (+) 2474 Protein_5971 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=734929 P4833_RS30230 WP_003095839.1 6417602..6418198(-) (pilN) [Pseudomonas aeruginosa strain PACL]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=734929 P4833_RS30230 WP_003095839.1 6417602..6418198(-) (pilN) [Pseudomonas aeruginosa strain PACL]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAATATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369