Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | LLE34_RS02355 | Genome accession | NZ_CP106769 |
| Coordinates | 452646..453596 (+) | Length | 316 a.a. |
| NCBI ID | WP_003699627.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10524 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 444506..506270 | 452646..453596 | within | 0 |
Gene organization within MGE regions
Location: 444506..506270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLE34_RS02310 (LLE34_02310) | - | 444506..445582 (-) | 1077 | WP_003692814.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| LLE34_RS02315 (LLE34_02315) | cysW | 445579..446439 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| LLE34_RS02320 (LLE34_02320) | cysT | 446628..447455 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| LLE34_RS02325 (LLE34_02325) | - | 447636..447968 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| LLE34_RS02330 (LLE34_02330) | - | 448295..448804 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| LLE34_RS02335 (LLE34_02335) | - | 449036..449617 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| LLE34_RS02340 (LLE34_02340) | dnaB | 449781..451187 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| LLE34_RS02345 (LLE34_02345) | pilH | 451341..452006 (+) | 666 | WP_003699624.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| LLE34_RS02350 (LLE34_02350) | pilV | 452038..452649 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| LLE34_RS02355 (LLE34_02355) | pilJ | 452646..453596 (+) | 951 | WP_003699627.1 | PilW family protein | Machinery gene |
| LLE34_RS02360 (LLE34_02360) | pilK | 453575..454186 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| LLE34_RS02365 (LLE34_02365) | pilL | 454188..454661 (+) | 474 | WP_172760650.1 | PilX family type IV pilin | Machinery gene |
| LLE34_RS02370 (LLE34_02370) | - | 454731..455039 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| LLE34_RS02375 (LLE34_02375) | - | 455036..455746 (-) | 711 | Protein_465 | AzlC family ABC transporter permease | - |
| LLE34_RS02380 (LLE34_02380) | dut | 455912..456364 (+) | 453 | WP_003699637.1 | dUTP diphosphatase | - |
| LLE34_RS02385 (LLE34_02385) | dapC | 456440..457627 (+) | 1188 | WP_003699639.1 | succinyldiaminopimelate transaminase | - |
| LLE34_RS02390 (LLE34_02390) | yaaA | 457783..458562 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| LLE34_RS02405 (LLE34_02405) | - | 459092..460285 (+) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| LLE34_RS02410 (LLE34_02410) | - | 460641..460910 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| LLE34_RS02415 (LLE34_02415) | - | 461105..461788 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| LLE34_RS11810 | - | 462069..462335 (-) | 267 | Protein_472 | hypothetical protein | - |
| LLE34_RS02425 (LLE34_02425) | - | 462446..462661 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| LLE34_RS02430 (LLE34_02430) | - | 462713..463204 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| LLE34_RS02435 (LLE34_02435) | - | 463201..463383 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| LLE34_RS02440 (LLE34_02440) | - | 463523..464209 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| LLE34_RS02445 (LLE34_02445) | - | 464278..464439 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| LLE34_RS02450 (LLE34_02450) | - | 464436..464711 (-) | 276 | WP_033911205.1 | NGO1622 family putative holin | - |
| LLE34_RS02455 (LLE34_02455) | - | 464864..465196 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| LLE34_RS02460 (LLE34_02460) | - | 465338..465613 (-) | 276 | WP_229930546.1 | hypothetical protein | - |
| LLE34_RS02465 (LLE34_02465) | - | 465610..466086 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| LLE34_RS02470 (LLE34_02470) | - | 466119..466319 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| LLE34_RS02475 (LLE34_02475) | - | 466803..467021 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| LLE34_RS02480 (LLE34_02480) | - | 467038..467397 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| LLE34_RS02485 (LLE34_02485) | - | 467398..467937 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| LLE34_RS02490 (LLE34_02490) | - | 468097..468813 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| LLE34_RS02495 (LLE34_02495) | - | 469194..469421 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| LLE34_RS02500 (LLE34_02500) | - | 469539..470603 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| LLE34_RS02505 (LLE34_02505) | - | 470600..471961 (+) | 1362 | WP_003706450.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LLE34_RS02510 (LLE34_02510) | - | 471978..472208 (+) | 231 | WP_033909710.1 | hypothetical protein | - |
| LLE34_RS02515 (LLE34_02515) | - | 472300..472794 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| LLE34_RS02520 (LLE34_02520) | - | 472971..473120 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| LLE34_RS02525 (LLE34_02525) | - | 473148..473429 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| LLE34_RS02530 (LLE34_02530) | - | 473420..473800 (+) | 381 | WP_033910829.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LLE34_RS02535 (LLE34_02535) | - | 473817..473945 (-) | 129 | WP_012503747.1 | hypothetical protein | - |
| LLE34_RS02540 (LLE34_02540) | - | 474067..474474 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| LLE34_RS02545 (LLE34_02545) | - | 474565..475725 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| LLE34_RS02550 (LLE34_02550) | - | 476007..476876 (+) | 870 | WP_003700071.1 | BRO family protein | - |
| LLE34_RS02555 (LLE34_02555) | - | 477169..477618 (+) | 450 | WP_003689093.1 | hypothetical protein | - |
| LLE34_RS02560 (LLE34_02560) | terL | 477680..479101 (+) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| LLE34_RS02565 (LLE34_02565) | - | 479098..481245 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| LLE34_RS02570 (LLE34_02570) | - | 481313..482470 (+) | 1158 | WP_003700068.1 | hypothetical protein | - |
| LLE34_RS02575 (LLE34_02575) | - | 482511..484010 (+) | 1500 | WP_003691419.1 | hypothetical protein | - |
| LLE34_RS02580 (LLE34_02580) | - | 484017..484379 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| LLE34_RS02585 (LLE34_02585) | - | 484382..484912 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| LLE34_RS02590 (LLE34_02590) | - | 484912..485394 (+) | 483 | WP_003706029.1 | HK97 gp10 family phage protein | - |
| LLE34_RS02595 (LLE34_02595) | - | 485391..485819 (+) | 429 | WP_003697213.1 | hypothetical protein | - |
| LLE34_RS02600 (LLE34_02600) | - | 485845..486618 (+) | 774 | WP_003691416.1 | hypothetical protein | - |
| LLE34_RS02605 (LLE34_02605) | - | 486680..487009 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| LLE34_RS02610 (LLE34_02610) | - | 487021..487287 (+) | 267 | WP_003692873.1 | hypothetical protein | - |
| LLE34_RS02615 (LLE34_02615) | - | 487287..487886 (+) | 600 | WP_003692874.1 | DUF2460 domain-containing protein | - |
| LLE34_RS02620 (LLE34_02620) | - | 487883..488737 (+) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| LLE34_RS02625 (LLE34_02625) | - | 488739..489170 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| LLE34_RS02630 (LLE34_02630) | - | 489198..489476 (-) | 279 | WP_003692877.1 | helix-turn-helix domain-containing protein | - |
| LLE34_RS02635 (LLE34_02635) | - | 489716..493861 (+) | 4146 | WP_025456199.1 | phage tail protein | - |
| LLE34_RS02640 (LLE34_02640) | - | 493973..494278 (+) | 306 | WP_003689058.1 | hypothetical protein | - |
| LLE34_RS02645 (LLE34_02645) | - | 494349..494819 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| LLE34_RS02650 (LLE34_02650) | - | 494820..495152 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| LLE34_RS02655 (LLE34_02655) | - | 495520..495867 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LLE34_RS02660 (LLE34_02660) | - | 495867..496103 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LLE34_RS02665 (LLE34_02665) | - | 496143..496268 (+) | 126 | WP_255294325.1 | hypothetical protein | - |
| LLE34_RS02670 (LLE34_02670) | - | 496310..496849 (+) | 540 | WP_047951643.1 | TIGR02594 family protein | - |
| LLE34_RS02675 (LLE34_02675) | - | 496849..497007 (+) | 159 | WP_003691816.1 | hypothetical protein | - |
| LLE34_RS02680 (LLE34_02680) | - | 496991..497332 (+) | 342 | WP_003700102.1 | hypothetical protein | - |
| LLE34_RS02685 (LLE34_02685) | - | 497316..497489 (+) | 174 | WP_003705498.1 | hypothetical protein | - |
| LLE34_RS02690 (LLE34_02690) | - | 497803..497952 (+) | 150 | WP_003689043.1 | hypothetical protein | - |
| LLE34_RS02695 (LLE34_02695) | - | 497982..501029 (+) | 3048 | WP_003700052.1 | tape measure protein | - |
| LLE34_RS02700 (LLE34_02700) | - | 501089..501568 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| LLE34_RS02705 (LLE34_02705) | - | 501907..502896 (-) | 990 | WP_003689040.1 | site-specific integrase | - |
| LLE34_RS02710 (LLE34_02710) | - | 503156..503344 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| LLE34_RS02715 (LLE34_02715) | purM | 503585..504619 (+) | 1035 | WP_003692893.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| LLE34_RS02720 (LLE34_02720) | - | 505617..506270 (+) | 654 | WP_229944331.1 | IS1595 family transposase | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 34788.50 Da Isoelectric Point: 9.1777
>NTDB_id=734724 LLE34_RS02355 WP_003699627.1 452646..453596(+) (pilJ) [Neisseria gonorrhoeae strain 10524]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 951 bp
>NTDB_id=734724 LLE34_RS02355 WP_003699627.1 452646..453596(+) (pilJ) [Neisseria gonorrhoeae strain 10524]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
93.038 |
100 |
0.93 |