Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P4831_RS05745 Genome accession   NZ_CP120842
Coordinates   1093205..1095172 (-) Length   655 a.a.
NCBI ID   WP_023164064.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZFM559     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088205..1100172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS05715 - 1088361..1089893 (+) 1533 WP_003130647.1 Nramp family divalent metal transporter -
  P4831_RS05720 - 1089995..1090963 (+) 969 WP_003130649.1 PhoH family protein -
  P4831_RS05725 - 1091021..1091500 (+) 480 WP_003130650.1 NUDIX hydrolase -
  P4831_RS05730 ybeY 1091652..1092140 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  P4831_RS05735 - 1092124..1092579 (+) 456 WP_003130653.1 diacylglycerol kinase -
  P4831_RS05740 - 1092593..1093171 (+) 579 WP_003130655.1 nucleotidyltransferase family protein -
  P4831_RS05745 comFA 1093205..1095172 (-) 1968 WP_023164064.1 helicase-related protein Machinery gene
  P4831_RS05750 - 1095229..1095858 (+) 630 WP_003130660.1 YigZ family protein -
  P4831_RS05755 - 1095992..1096489 (+) 498 WP_003130662.1 VanZ family protein -
  P4831_RS05760 - 1096537..1097556 (+) 1020 WP_023164065.1 DUF475 domain-containing protein -
  P4831_RS05765 - 1097672..1098418 (+) 747 WP_003130666.1 bifunctional metallophosphatase/5'-nucleotidase -
  P4831_RS05770 glyQ 1098703..1099656 (+) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 75490.04 Da        Isoelectric Point: 9.7219

>NTDB_id=734482 P4831_RS05745 WP_023164064.1 1093205..1095172(-) (comFA) [Lactococcus lactis strain ZFM559]
MSTNQEKLFGRLLLKNDILQLIKNTDKISVSKIFSNFLLETKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTAMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYV
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFITENPKQCVRQLEKSKNEPTGRFFMIKCLLCSRNIAQNFLFSELFLLKSPQNLLCSKCQKNFEKI
PEAHCPCCCKPNVHEICTDCQNWEKRGYKIRHQAIFHYNQAMKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPIS
PKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKERLESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQIL
KEAGVHEIRSFSLCC

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=734482 P4831_RS05745 WP_023164064.1 1093205..1095172(-) (comFA) [Lactococcus lactis strain ZFM559]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTGCAACTTATAAAAAATACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAACGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCTGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTTTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGCAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATGTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACATCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGTT
AGAGAAATCAAAAAATGAACCAACTGGGAGGTTTTTCATGATAAAGTGTTTGCTTTGTTCAAGAAATATTGCTCAAAACT
TTCTATTTAGTGAACTTTTCCTACTCAAAAGTCCTCAAAATCTTTTATGTTCTAAATGTCAAAAAAATTTTGAAAAGATC
CCTGAAGCTCACTGTCCTTGCTGCTGTAAGCCAAATGTCCATGAGATCTGTACTGATTGTCAAAATTGGGAAAAAAGAGG
ATACAAAATCAGACATCAGGCAATTTTTCACTACAATCAAGCAATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAG
ATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATATTTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCA
CCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTTTTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAA
AGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGATTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGC
TAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATACAACAGGTACCACCTTATATCACGCATCACAAATTCTA
AAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCTGTTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(114-233)

Helicase conserved C-terminal domain (Helicase_C)

(300-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

71

61.069

0.434