Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NDM80_RS00495 Genome accession   NZ_CP106749
Coordinates   105581..106126 (-) Length   181 a.a.
NCBI ID   WP_003692554.1    Uniprot ID   Q5FAD1
Organism   Neisseria gonorrhoeae strain 10723     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100581..111126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS00485 (NDM80_00485) - 101586..102098 (-) 513 WP_003687349.1 shikimate kinase -
  NDM80_RS00490 (NDM80_00490) pilQ 103367..105562 (-) 2196 WP_003696681.1 type IV pilus secretin PilQ Machinery gene
  NDM80_RS00495 (NDM80_00495) pilP 105581..106126 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  NDM80_RS00500 (NDM80_00500) - 106144..106791 (-) 648 WP_192274839.1 type 4a pilus biogenesis protein PilO -
  NDM80_RS00505 (NDM80_00505) pilN 106792..107391 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  NDM80_RS00510 (NDM80_00510) pilM 107394..108509 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  NDM80_RS00515 (NDM80_00515) - 108661..111057 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20094.62 Da        Isoelectric Point: 4.7529

>NTDB_id=734362 NDM80_RS00495 WP_003692554.1 105581..106126(-) (pilP) [Neisseria gonorrhoeae strain 10723]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=734362 NDM80_RS00495 WP_003692554.1 105581..106126(-) (pilP) [Neisseria gonorrhoeae strain 10723]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FAD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983