Detailed information NTG0073426

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: FNP71_RS08890
• Genome accession: NZ_AP019714
• Coordinates: 1689719..1690498 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain NBRC 13719
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1684719..1695498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNP71_RS08870 (NBRC13719_16530)	trmFO	1685412..1686719 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
FNP71_RS08875 (NBRC13719_16540)	xerC	1686787..1687701 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
FNP71_RS08880 (NBRC13719_16550)	clpQ	1687714..1688259 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
FNP71_RS08885 (NBRC13719_16560)	hslU	1688267..1689679 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
FNP71_RS08890 (NBRC13719_16570)	codY	1689719..1690498 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
FNP71_RS08895 (NBRC13719_16580)	flgB	1690878..1691267 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
FNP71_RS08900 (NBRC13719_16590)	flgC	1691267..1691719 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
FNP71_RS08905 (NBRC13719_16600)	fliE	1691730..1692050 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
FNP71_RS08910 (NBRC13719_16610)	fliF	1692096..1693706 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
FNP71_RS08915 (NBRC13719_16620)	fliG	1693719..1694735 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
FNP71_RS08920 (NBRC13719_16630)	fliH	1694728..1695480 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=73426 FNP71_RS08890 WP_003220850.1 1689719..1690498(+) (codY) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=73426 FNP71_RS08890 WP_003220850.1 1689719..1690498(+) (codY) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467