Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N7980_RS12385 Genome accession   NZ_CP106671
Coordinates   2420861..2421640 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM116301     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415861..2426640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS12355 (N7980_12355) fliH 2415879..2416631 (-) 753 WP_032725764.1 flagellar assembly protein FliH -
  N7980_RS12360 (N7980_12360) fliG 2416624..2417640 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  N7980_RS12365 (N7980_12365) fliF 2417653..2419263 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  N7980_RS12370 (N7980_12370) fliE 2419309..2419629 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  N7980_RS12375 (N7980_12375) flgC 2419640..2420092 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  N7980_RS12380 (N7980_12380) flgB 2420092..2420481 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  N7980_RS12385 (N7980_12385) codY 2420861..2421640 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N7980_RS12390 (N7980_12390) hslU 2421680..2423083 (-) 1404 WP_041850833.1 HslU--HslV peptidase ATPase subunit -
  N7980_RS12395 (N7980_12395) clpQ 2423100..2423645 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  N7980_RS12400 (N7980_12400) xerC 2423658..2424572 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  N7980_RS12405 (N7980_12405) trmFO 2424640..2425947 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=733893 N7980_RS12385 WP_003220850.1 2420861..2421640(-) (codY) [Bacillus subtilis strain SRCM116301]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=733893 N7980_RS12385 WP_003220850.1 2420861..2421640(-) (codY) [Bacillus subtilis strain SRCM116301]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467