Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N7921_RS08680 Genome accession   NZ_CP106652
Coordinates   1663721..1664500 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain 33.4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658721..1669500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS08660 (N7921_08660) trmFO 1659425..1660729 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N7921_RS08665 (N7921_08665) xerC 1660792..1661709 (+) 918 WP_041108978.1 tyrosine recombinase XerC -
  N7921_RS08670 (N7921_08670) hslV 1661724..1662269 (+) 546 WP_095408474.1 ATP-dependent protease subunit HslV -
  N7921_RS08675 (N7921_08675) hslU 1662286..1663686 (+) 1401 WP_144485184.1 HslU--HslV peptidase ATPase subunit -
  N7921_RS08680 (N7921_08680) codY 1663721..1664500 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N7921_RS08685 (N7921_08685) flgB 1664789..1665178 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  N7921_RS08690 (N7921_08690) flgC 1665178..1665630 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  N7921_RS08695 (N7921_08695) fliE 1665642..1665959 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  N7921_RS08700 (N7921_08700) fliF 1666009..1667601 (+) 1593 WP_095408476.1 flagellar basal-body MS-ring/collar protein FliF -
  N7921_RS08705 (N7921_08705) fliG 1667613..1668629 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  N7921_RS08710 (N7921_08710) fliH 1668622..1669386 (+) 765 WP_144485188.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=733715 N7921_RS08680 WP_007499612.1 1663721..1664500(+) (codY) [Bacillus safensis strain 33.4]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=733715 N7921_RS08680 WP_007499612.1 1663721..1664500(+) (codY) [Bacillus safensis strain 33.4]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471