Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   N8E87_RS01245 Genome accession   NZ_CP104917
Coordinates   254709..255230 (-) Length   173 a.a.
NCBI ID   WP_264245432.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 249709..260230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS01230 (N8E87_01230) - 253035..253340 (-) 306 WP_264245426.1 DUF5374 domain-containing protein -
  N8E87_RS01235 (N8E87_01235) - 253321..253986 (-) 666 WP_264245428.1 DUF2572 family protein -
  N8E87_RS01240 (N8E87_01240) - 253988..254707 (-) 720 WP_264245430.1 hypothetical protein -
  N8E87_RS01245 (N8E87_01245) comN 254709..255230 (-) 522 WP_264245432.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N8E87_RS01265 (N8E87_01265) pal 255870..256322 (-) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  N8E87_RS01270 (N8E87_01270) tolB 256333..257622 (-) 1290 WP_264246717.1 Tol-Pal system beta propeller repeat protein TolB -
  N8E87_RS01275 (N8E87_01275) tolA 257674..258882 (-) 1209 WP_264245434.1 cell envelope integrity protein TolA -
  N8E87_RS01280 (N8E87_01280) tolR 258899..259321 (-) 423 WP_046098639.1 colicin uptake protein TolR -
  N8E87_RS01285 (N8E87_01285) tolQ 259373..260056 (-) 684 WP_046098640.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19991.36 Da        Isoelectric Point: 8.4767

>NTDB_id=733492 N8E87_RS01245 WP_264245432.1 254709..255230(-) (comN) [Avibacterium paragallinarum strain AP-2]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMANIYTPTFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=733492 N8E87_RS01245 WP_264245432.1 254709..255230(-) (comN) [Avibacterium paragallinarum strain AP-2]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCATTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGCAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGCTAATATTTATACGCC
GACGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

52.381

97.11

0.509