Detailed information NTG0733466

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: P5647_RS13905
• Genome accession: NZ_CP120622
• Coordinates: 2668224..2669489 (+)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis strain DSM 1090
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2663224..2674489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5647_RS13885 (P5647_13885)	yrrB	2664595..2665215 (-)	621	WP_010886584.1	tetratricopeptide repeat protein	-
P5647_RS13890 (P5647_13890)	mnmA	2665301..2666416 (-)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
P5647_RS13895 (P5647_13895)	iscSA	2666447..2667586 (-)	1140	WP_003246057.1	cysteine desulfurase family protein	-
P5647_RS13900 (P5647_13900)	cymR	2667605..2668021 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
P5647_RS13905 (P5647_13905)	rarA	2668224..2669489 (+)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
P5647_RS13910 (P5647_13910)	tcdA	2669531..2670295 (-)	765	WP_003229763.1	tRNA threonylcarbamoyladenosine dehydratase	-
P5647_RS13920 (P5647_13920)	aspS	2670631..2672409 (-)	1779	WP_003229758.1	aspartate--tRNA ligase	-
P5647_RS13925 (P5647_13925)	hisS	2672423..2673697 (-)	1275	WP_003229755.1	histidine--tRNA ligase	-
P5647_RS13930 (P5647_13930)	yrzK	2674079..2674249 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=733466 P5647_RS13905 WP_004398500.1 2668224..2669489(+) (rarA) [Bacillus subtilis strain DSM 1090]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=733466 P5647_RS13905 WP_004398500.1 2668224..2669489(+) (rarA) [Bacillus subtilis strain DSM 1090]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1