Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N7297_RS00770 Genome accession   NZ_CP104908
Coordinates   144195..145013 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain YZM-0314     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139195..150013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7297_RS00755 (N7297_00755) pilE 139412..139837 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  N7297_RS00760 (N7297_00760) pilY2 139834..140316 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  N7297_RS00765 (N7297_00765) pilY1 140329..144183 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  N7297_RS00770 (N7297_00770) pilX 144195..145013 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N7297_RS00775 (N7297_00775) pilW 145010..146011 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  N7297_RS00780 (N7297_00780) pilV 146012..146572 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  N7297_RS00785 (N7297_00785) fimU 146566..147039 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N7297_RS00790 (N7297_00790) ispH 147209..148159 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N7297_RS00795 (N7297_00795) gmk 148282..148911 (+) 630 WP_000015937.1 guanylate kinase -
  N7297_RS00800 (N7297_00800) rpoZ 148984..149262 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N7297_RS00805 (N7297_00805) - 149301..149430 (+) 130 Protein_156 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=733338 N7297_RS00770 WP_000149374.1 144195..145013(-) (pilX) [Acinetobacter baumannii strain YZM-0314]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=733338 N7297_RS00770 WP_000149374.1 144195..145013(-) (pilX) [Acinetobacter baumannii strain YZM-0314]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993