Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P5657_RS18375 Genome accession   NZ_CP120621
Coordinates   3458352..3459269 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain DSM 13019     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3453352..3464269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS18350 (P5657_18350) spx 3453711..3454106 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  P5657_RS18355 (P5657_18355) yjbC 3454287..3454865 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5657_RS18360 (P5657_18360) yjbB 3455028..3456245 (-) 1218 WP_134991584.1 MFS transporter -
  P5657_RS18365 (P5657_18365) oppF 3456352..3457269 (-) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  P5657_RS18370 (P5657_18370) oppD 3457271..3458347 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  P5657_RS18375 (P5657_18375) amiD 3458352..3459269 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  P5657_RS18380 (P5657_18380) oppB 3459273..3460208 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  P5657_RS18385 (P5657_18385) oppA 3460316..3461953 (-) 1638 WP_063335040.1 oligopeptide ABC transporter substrate-binding protein OppA -
  P5657_RS18390 (P5657_18390) trpS 3462697..3463689 (+) 993 WP_134991585.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=733338 P5657_RS18375 WP_003232954.1 3458352..3459269(-) (amiD) [Bacillus subtilis strain DSM 13019]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=733338 P5657_RS18375 WP_003232954.1 3458352..3459269(-) (amiD) [Bacillus subtilis strain DSM 13019]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364