Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   N7761_RS07065 Genome accession   NZ_CP104882
Coordinates   1382970..1383272 (+) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377970..1388272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS07040 (N7761_07040) - 1378387..1378614 (-) 228 WP_005569656.1 EexN family lipoprotein -
  N7761_RS07045 (N7761_07045) - 1378628..1379359 (-) 732 WP_014167949.1 type IV secretion system protein -
  N7761_RS07050 (N7761_07050) - 1379370..1382141 (-) 2772 WP_014167948.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  N7761_RS07055 (N7761_07055) - 1382154..1382387 (-) 234 WP_019518353.1 TrbC/VirB2 family protein -
  N7761_RS07060 (N7761_07060) - 1382393..1382995 (+) 603 WP_014167946.1 DUF2572 family protein -
  N7761_RS07065 (N7761_07065) comQ 1382970..1383272 (+) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  N7761_RS07070 (N7761_07070) recC 1383284..1386700 (+) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  N7761_RS07075 (N7761_07075) rimI 1386702..1387145 (-) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  N7761_RS07080 (N7761_07080) - 1387155..1387592 (-) 438 WP_005572487.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=733197 N7761_RS07065 WP_005545595.1 1382970..1383272(+) (comQ) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=733197 N7761_RS07065 WP_005545595.1 1382970..1383272(+) (comQ) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5