Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SAP2_RS06230 Genome accession   NZ_AP019698
Coordinates   1299428..1301821 (+) Length   797 a.a.
NCBI ID   WP_107377661.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain P2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294428..1306821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAP2_RS06210 (SAP2_12310) sal 1294535..1296169 (+) 1635 WP_142019617.1 Sal family ABC-F type ribosomal protection protein -
  SAP2_RS06215 (SAP2_12320) - 1296231..1297373 (+) 1143 WP_002510461.1 cysteine desulfurase family protein -
  SAP2_RS06220 (SAP2_12330) mnmA 1297375..1298487 (+) 1113 WP_002510462.1 tRNA 2-thiouridine(34) synthase MnmA -
  SAP2_RS06225 (SAP2_12340) - 1298759..1299424 (+) 666 WP_142019618.1 tetratricopeptide repeat protein -
  SAP2_RS06230 (SAP2_12350) recD2 1299428..1301821 (+) 2394 WP_107377661.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SAP2_RS06235 (SAP2_12360) alaS 1302144..1304774 (+) 2631 WP_002510465.1 alanine--tRNA ligase -
  SAP2_RS06240 (SAP2_12370) - 1304839..1305102 (+) 264 WP_002510466.1 IreB family regulatory phosphoprotein -
  SAP2_RS06245 (SAP2_12380) ruvX 1305105..1305533 (+) 429 WP_142019619.1 Holliday junction resolvase RuvX -
  SAP2_RS06250 (SAP2_12390) - 1305550..1305882 (+) 333 WP_002510468.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89343.95 Da        Isoelectric Point: 4.4178

>NTDB_id=73313 SAP2_RS06230 WP_107377661.1 1299428..1301821(+) (recD2) [Staphylococcus arlettae strain P2]
MADPTLFNYSMIKGTVDAILFQNKDNFYTVLKVDTIETNESLDSMPTVVGFFPEIVEGDVYTFKGQIATHPKYGKQLKAD
IFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAIADILNDSQVLSKVPSLSASKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMNIYQAYLGETLNVVEKTPYQLVYDVKGIGFNKADMLAKNIGIQYNDPERLKAGILYILEEECIKQG
HTYLPTQFVLELVQDILSNPPSEVIDQSILANQVEQLVNEDKLVQQEAELAIPSLYYSEIKSVQNLYRNFTYTKKLKDIE
MSDLLLEIGNIEDQNTVSYAESQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKEDDYPIVLG
APTGRASKRLAEATGLEAMTIHRLIGWNQETQPEDILDNEINAKLIIIDEMSMVDTWLFHQFMSAVPLDAQVILVGDEDQ
LPSVGPGQVFKDLIDSGVIPRVNLTEVYRQQDGSSIIELAHKIKLGLPIDITERFHDRNFINCQTEQIPQVVEKVVASAV
NKGYDMSDIQVLAPMYKGSAGIKRLNQVLQDILNPKIKDTREIAFGEVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALDKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPNAFTIGLKTNGQVRMTQLCDLLQAYFDSDSGKDDDQEDINQQLNSTVTLTESTIYQIDPMINMGQLSPYDFVND

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=73313 SAP2_RS06230 WP_107377661.1 1299428..1301821(+) (recD2) [Staphylococcus arlettae strain P2]
ATGGCAGATCCTACACTGTTTAACTATTCAATGATTAAAGGTACAGTAGATGCTATTTTGTTTCAAAACAAAGATAATTT
TTATACTGTATTAAAAGTTGATACAATTGAAACCAATGAATCATTAGATAGTATGCCTACAGTTGTAGGGTTCTTTCCTG
AAATTGTGGAAGGTGATGTCTATACATTTAAAGGGCAAATAGCTACGCATCCTAAATATGGTAAACAATTAAAAGCAGAT
ATTTTTGAAAAGGAATTACCACAAACGAAGGAAGCAATTATCAGTTATTTGTCTAGTGACTTATTCAAAGGTATTGGTAA
AAAGACGGCTCAAAATATTGTTAATACACTCGGTGAAAATGCCATTGCTGATATATTAAACGATTCACAAGTTTTAAGTA
AGGTGCCGAGTTTATCTGCAAGCAAACAAAAACAAATTGCAGAACAAATTGCTAGCAACCAAGAAACAGAACAAATAATA
ATTAGATTACATGACTTAGGCTTTGGGCCGAAGTTAGCAATGAATATATACCAAGCTTATTTAGGTGAAACACTCAATGT
AGTAGAAAAGACACCTTACCAATTAGTATATGATGTCAAGGGTATTGGTTTTAATAAAGCTGATATGTTAGCCAAAAATA
TCGGTATTCAATATAACGATCCAGAACGTTTAAAAGCAGGAATACTCTATATACTAGAAGAAGAGTGTATTAAACAAGGA
CATACCTATTTACCTACGCAATTTGTTTTAGAATTGGTACAGGATATTTTATCTAATCCTCCATCTGAAGTCATAGATCA
ATCGATATTAGCTAATCAAGTTGAACAGCTAGTCAATGAAGATAAATTAGTACAGCAAGAAGCTGAATTAGCTATTCCAA
GTTTGTATTATTCAGAAATAAAGAGTGTCCAAAATTTATATCGCAATTTCACGTACACTAAAAAATTGAAAGATATTGAA
ATGTCCGACTTATTATTAGAAATTGGTAATATAGAGGACCAAAATACAGTCAGTTATGCTGAATCACAAAAAGAAGCACT
ACAAACCGCTATTAATTCAAAAGTGATGTTATTAACAGGAGGACCTGGTACAGGGAAAACAACTGTAATTAAAGGCATCG
TAGAATTGTATGCTGAAATACATGGCCTTTCTTTAGATTATGACGATTATAAAGAAGATGATTATCCTATTGTGTTAGGT
GCTCCGACTGGGCGAGCGTCTAAACGATTAGCTGAAGCTACAGGATTAGAAGCTATGACCATTCACCGACTTATTGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCTAAATTGATTATTATAGATGAGATGTCGATGG
TAGATACTTGGTTATTTCATCAATTTATGAGTGCAGTACCGTTAGATGCACAAGTCATTTTAGTTGGTGATGAGGATCAA
TTACCGTCAGTTGGTCCCGGACAAGTCTTTAAAGATTTAATTGACTCTGGAGTTATTCCTAGAGTTAATTTAACTGAAGT
ATATAGACAGCAAGATGGATCTAGTATTATAGAGTTAGCGCATAAAATTAAATTGGGGTTACCAATAGATATTACCGAGC
GTTTTCATGACCGTAATTTTATCAACTGTCAAACAGAACAAATACCACAAGTTGTTGAAAAAGTTGTAGCTAGTGCTGTT
AACAAAGGGTATGATATGAGTGATATTCAAGTATTAGCACCTATGTACAAAGGTTCTGCAGGCATTAAGCGATTAAATCA
AGTATTACAAGATATATTAAATCCAAAAATAAAAGATACGCGTGAAATTGCATTTGGTGAAGTTTTATTTAGAAAAGGCG
ATAAAGTATTGCAATTGGTTAATAGACCAAATGATAATATTTTTAATGGAGATATCGGAGTAATTGTAGGTATTTTTTGG
GCTAAAGAAAATGCCTTAGATAAAGATGTATTAGTGGTTGATTTTGAAGGTAATGAGATAACATTTACACGACAAGATTT
AATGGAATTAACACATGCTTATTGTACATCTATCCATAAATCACAAGGTTCTGAATTTCCAATTGTCATTATGCCTATGG
TAAAACAGTATTTCAGAATGTTACAAAAGCCTATTTTGTATACAGGTCTGACACGTGCAAAACAATCATTGGTCTTTTTA
GGTGATCCCAATGCATTTACAATTGGTTTAAAGACAAATGGTCAAGTAAGAATGACTCAATTATGTGACTTACTGCAAGC
TTACTTTGATAGTGACTCAGGTAAAGATGATGACCAAGAAGATATTAACCAGCAACTTAATAGTACAGTTACTTTGACTG
AGAGTACCATATATCAAATTGACCCAATGATTAATATGGGGCAATTATCACCATATGACTTCGTAAATGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.566

99.749

0.504

Multiple sequence alignment