Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N8A75_RS08675 Genome accession   NZ_CP104878
Coordinates   1663175..1663954 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain 4ZT     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658175..1668954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS08655 (N8A75_08655) trmFO 1658868..1660175 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N8A75_RS08660 (N8A75_08660) xerC 1660243..1661157 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  N8A75_RS08665 (N8A75_08665) clpQ 1661170..1661715 (+) 546 WP_046160401.1 ATP-dependent protease subunit ClpQ -
  N8A75_RS08670 (N8A75_08670) hslU 1661732..1663135 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  N8A75_RS08675 (N8A75_08675) codY 1663175..1663954 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N8A75_RS08680 (N8A75_08680) flgB 1664334..1664723 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  N8A75_RS08685 (N8A75_08685) flgC 1664723..1665175 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  N8A75_RS08690 (N8A75_08690) fliE 1665186..1665506 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  N8A75_RS08695 (N8A75_08695) fliF 1665552..1667162 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  N8A75_RS08700 (N8A75_08700) fliG 1667175..1668191 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  N8A75_RS08705 (N8A75_08705) fliH 1668184..1668936 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=733116 N8A75_RS08675 WP_003220850.1 1663175..1663954(+) (codY) [Bacillus subtilis strain 4ZT]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=733116 N8A75_RS08675 WP_003220850.1 1663175..1663954(+) (codY) [Bacillus subtilis strain 4ZT]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCAGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467