Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P5661_RS06065 Genome accession   NZ_CP120600
Coordinates   1176523..1177440 (+) Length   305 a.a.
NCBI ID   WP_038828814.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171523..1182440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS06050 (P5661_06050) trpS 1172105..1173097 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  P5661_RS06055 (P5661_06055) oppA 1173840..1175477 (+) 1638 WP_277709403.1 oligopeptide ABC transporter substrate-binding protein OppA -
  P5661_RS06060 (P5661_06060) oppB 1175584..1176519 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  P5661_RS06065 (P5661_06065) amiD 1176523..1177440 (+) 918 WP_038828814.1 oligopeptide ABC transporter permease OppC Regulator
  P5661_RS06070 (P5661_06070) oppD 1177445..1178521 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  P5661_RS06075 (P5661_06075) oppF 1178523..1179440 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  P5661_RS06080 (P5661_06080) yjbB 1179547..1180764 (+) 1218 WP_072175656.1 MFS transporter -
  P5661_RS06085 (P5661_06085) yjbC 1180927..1181505 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5661_RS06090 (P5661_06090) spx 1181686..1182081 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33607.10 Da        Isoelectric Point: 10.2873

>NTDB_id=732952 P5661_RS06065 WP_038828814.1 1176523..1177440(+) (amiD) [Bacillus subtilis strain PRO112]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIVLMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=732952 P5661_RS06065 WP_038828814.1 1176523..1177440(+) (amiD) [Bacillus subtilis strain PRO112]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGTAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTG
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361