Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P5628_RS06045 Genome accession   NZ_CP120577
Coordinates   1172794..1173711 (+) Length   305 a.a.
NCBI ID   WP_038828814.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167794..1178711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS06030 (P5628_06030) trpS 1168376..1169368 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  P5628_RS06035 (P5628_06035) oppA 1170111..1171748 (+) 1638 WP_277709403.1 oligopeptide ABC transporter substrate-binding protein OppA -
  P5628_RS06040 (P5628_06040) oppB 1171855..1172790 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  P5628_RS06045 (P5628_06045) amiD 1172794..1173711 (+) 918 WP_038828814.1 oligopeptide ABC transporter permease OppC Regulator
  P5628_RS06050 (P5628_06050) oppD 1173716..1174792 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  P5628_RS06055 (P5628_06055) oppF 1174794..1175711 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  P5628_RS06060 (P5628_06060) yjbB 1175818..1177035 (+) 1218 WP_072175656.1 MFS transporter -
  P5628_RS06065 (P5628_06065) yjbC 1177198..1177776 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5628_RS06070 (P5628_06070) spx 1177957..1178352 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33607.10 Da        Isoelectric Point: 10.2873

>NTDB_id=732661 P5628_RS06045 WP_038828814.1 1172794..1173711(+) (amiD) [Bacillus subtilis strain PRO53]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIVLMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=732661 P5628_RS06045 WP_038828814.1 1172794..1173711(+) (amiD) [Bacillus subtilis strain PRO53]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGTAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTG
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361