Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   P5628_RS02330 Genome accession   NZ_CP120577
Coordinates   457003..457437 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PRO53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 452003..462437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS02300 (P5628_02300) ydaD 452650..453510 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  P5628_RS02305 (P5628_02305) lyxE 453526..454029 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  P5628_RS02310 (P5628_02310) ydaF 454115..454666 (+) 552 WP_003234398.1 GNAT family protein -
  P5628_RS02315 (P5628_02315) ydaG 454744..455166 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  P5628_RS02320 (P5628_02320) amj 455672..456481 (+) 810 WP_003234394.1 lipid II flippase Amj -
  P5628_RS02325 (P5628_02325) ydzA 456526..456816 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  P5628_RS02330 (P5628_02330) lrpC 457003..457437 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  P5628_RS02335 (P5628_02335) topB 457502..459685 (+) 2184 WP_277709262.1 DNA topoisomerase III -
  P5628_RS02340 (P5628_02340) epsJ 459887..460975 (+) 1089 WP_277709264.1 lipoprotein YdaJ -
  P5628_RS02345 (P5628_02345) epsK 460956..461807 (+) 852 WP_277709265.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=732639 P5628_RS02330 WP_003246585.1 457003..457437(+) (lrpC) [Bacillus subtilis strain PRO53]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=732639 P5628_RS02330 WP_003246585.1 457003..457437(+) (lrpC) [Bacillus subtilis strain PRO53]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
TAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1