Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N7277_RS05385 Genome accession   NZ_CP104850
Coordinates   1177955..1178608 (-) Length   217 a.a.
NCBI ID   WP_274780677.1    Uniprot ID   -
Organism   Cloacibacterium sp. TD35     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172955..1183608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7277_RS05360 (N7277_05360) - 1174029..1174655 (-) 627 WP_274780673.1 DUF4290 domain-containing protein -
  N7277_RS05365 (N7277_05365) - 1174702..1175106 (-) 405 WP_274780674.1 DUF393 domain-containing protein -
  N7277_RS05370 (N7277_05370) - 1175108..1175599 (-) 492 WP_274780675.1 heme-binding domain-containing protein -
  N7277_RS05375 (N7277_05375) der 1175854..1177161 (+) 1308 WP_069799639.1 ribosome biogenesis GTPase Der -
  N7277_RS05380 (N7277_05380) upp 1177301..1177951 (+) 651 WP_274780676.1 uracil phosphoribosyltransferase -
  N7277_RS05385 (N7277_05385) comF 1177955..1178608 (-) 654 WP_274780677.1 double zinc ribbon domain-containing protein Machinery gene
  N7277_RS05390 (N7277_05390) - 1178655..1179104 (-) 450 WP_274780678.1 DUF4442 domain-containing protein -
  N7277_RS05395 (N7277_05395) - 1179235..1181364 (-) 2130 WP_274780679.1 M3 family metallopeptidase -
  N7277_RS05400 (N7277_05400) - 1181490..1182293 (+) 804 WP_274780680.1 head GIN domain-containing protein -
  N7277_RS05405 (N7277_05405) - 1182385..1183179 (-) 795 WP_274780681.1 TPM domain-containing protein -
  N7277_RS05410 (N7277_05410) - 1183160..1183591 (-) 432 WP_274780802.1 TPM domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25406.56 Da        Isoelectric Point: 9.3259

>NTDB_id=732639 N7277_RS05385 WP_274780677.1 1177955..1178608(-) (comF) [Cloacibacterium sp. TD35]
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIIAEWTIERLKFTHEKLDVIITVPLHPKKLKKRGYNQLHLFADTLSKNWEIPHHKKALKRNTYQKAQAQKDKS
HRAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPSNEVSVLVMAFDS

Nucleotide


Download         Length: 654 bp        

>NTDB_id=732639 N7277_RS05385 WP_274780677.1 1177955..1178608(-) (comF) [Cloacibacterium sp. TD35]
ATGCTTCTGGATTTATTGTTCCCGAACAGATGTTTGCATTGTAATACCATCATTTCAAAAGACGAATTGGTTTGCCATGT
ATGTTTTCCTCAAATTAAATTTTCTCACTTTAATTTCTATGAAGAAAATCCGCTGAAACAGAGATGTAAGCTTTTATTCC
CAGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGTCAGAAAATCATTCACCAACTCAAATATCGT
TCTCAGGAAAAAGTTGGGAAAATTATTGCTGAATGGACTATAGAAAGGTTAAAATTTACCCATGAAAAACTTGATGTAAT
AATTACTGTTCCGCTTCATCCAAAAAAATTGAAGAAAAGAGGTTACAACCAATTACATCTTTTTGCAGACACGCTTTCTA
AAAATTGGGAAATACCTCATCACAAAAAAGCACTCAAAAGAAATACTTACCAAAAAGCACAAGCCCAAAAAGACAAATCT
CACCGTGCTGAAACCAAGTATGATTTTTCGCTCACCGAAGAAATTTCAGGAAAACATGTTTTGTTAATTGACGATGTTTT
CACCACAGGAAATACGATAAGTGCCATTGCTTGGGAAATACTGAAAAATCCAAGTAATGAAGTTAGCGTTTTGGTGATGG
CTTTTGATTCGTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)

Phosphoribosyl transferase domain (Pribosyltran)

(83-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.463

99.539

0.502