Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   N7E56_RS00640 Genome accession   NZ_CP104786
Coordinates   118761..119402 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain Ab-3556     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113761..124402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E56_RS00620 - 113808..114140 (+) 333 WP_000169594.1 hypothetical protein -
  N7E56_RS00625 - 114143..114967 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  N7E56_RS00630 ponA 114985..117540 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  N7E56_RS00635 pilM 117703..118761 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  N7E56_RS00640 pilN 118761..119402 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  N7E56_RS00645 pilO 119399..120139 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  N7E56_RS00650 pilP 120150..120677 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  N7E56_RS00655 pilQ 120745..122910 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  N7E56_RS00660 aroK 122922..123491 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=732302 N7E56_RS00640 WP_000201227.1 118761..119402(+) (pilN) [Acinetobacter baumannii strain Ab-3556]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=732302 N7E56_RS00640 WP_000201227.1 118761..119402(+) (pilN) [Acinetobacter baumannii strain Ab-3556]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709