Detailed information NTG0732146

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: P3T66_RS04130
• Genome accession: NZ_CP120512
• Coordinates: 810676..813204 (+)
• Length: 842 a.a.
• NCBI ID: WP_035147232.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain PMC104
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 805676..818204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3T66_RS04110 (P3T66_04110)	-	806317..807615 (+)	1299	WP_035147224.1	pyrimidine-nucleoside phosphorylase	-
P3T66_RS04115 (P3T66_04115)	-	807852..809186 (+)	1335	WP_035147226.1	FAD-dependent oxidoreductase	-
P3T66_RS04120 (P3T66_04120)	-	809340..809999 (+)	660	WP_277576181.1	histidine phosphatase family protein	-
P3T66_RS04125 (P3T66_04125)	-	810011..810670 (+)	660	WP_035147229.1	tetratricopeptide repeat protein	-
P3T66_RS04130 (P3T66_04130)	recD/recD2/recDB	810676..813204 (+)	2529	WP_035147232.1	ATP-dependent RecD-like DNA helicase	Machinery gene
P3T66_RS04135 (P3T66_04135)	-	813247..814458 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
P3T66_RS04140 (P3T66_04140)	-	814519..814758 (-)	240	WP_035147235.1	hypothetical protein	-
P3T66_RS04145 (P3T66_04145)	-	815023..815634 (+)	612	WP_056948489.1	LysE/ArgO family amino acid transporter	-
P3T66_RS04150 (P3T66_04150)	-	815726..816838 (+)	1113	WP_061827294.1	DNA alkylation repair protein	-
P3T66_RS04155 (P3T66_04155)	-	817017..817733 (+)	717	WP_035147513.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93311.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=732146 P3T66_RS04130 WP_035147232.1 810676..813204(+) (recD/recD2/recDB) [Latilactobacillus sakei strain PMC104]
MAILETENTVDNKPTVTGAVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMALAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKPTPAKEVAPEQLALVGDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=732146 P3T66_RS04130 WP_035147232.1 810676..813204(+) (recD/recD2/recDB) [Latilactobacillus sakei strain PMC104]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAGCGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAAGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCTGGCATCGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCACCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAATAATGGGATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTAGCAGAGCAATTAATGGCCTTAGCACACGATGGCAAAGTCGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGTCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTTCCAATT
TTATTGGCGGCACCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGGATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAGGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATTATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGCAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAACAGTCCGGAACTAAACGTCTTTAACGGTGAAATTGGGCAAATT
ACTGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGTTGAAACGAAACTTGTTGTATACAGCGGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCCTTTGATAAGGCGGCCAAGGAACTCTCCGCAAACCGGCAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACCAACGCCGGCTAAAGAAGTAGCGCCAGAACAATTGGCGTTAGTGGGCGATGCAGATGACAGT
GAAGAGACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418