Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   P3T66_RS01990 Genome accession   NZ_CP120512
Coordinates   424697..427060 (+) Length   787 a.a.
NCBI ID   WP_277576162.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain PMC104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419697..432060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS01965 (P3T66_01965) - 421739..421999 (+) 261 WP_011374097.1 IreB family regulatory phosphoprotein -
  P3T66_RS01970 (P3T66_01970) ruvX 421999..422442 (+) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  P3T66_RS01975 (P3T66_01975) - 422492..422803 (+) 312 WP_011374099.1 DUF1292 domain-containing protein -
  P3T66_RS01980 (P3T66_01980) rnhC 422991..423908 (-) 918 WP_011374100.1 ribonuclease HIII -
  P3T66_RS01985 (P3T66_01985) - 424102..424641 (+) 540 WP_016264660.1 CvpA family protein -
  P3T66_RS01990 (P3T66_01990) mutS/mutS2 424697..427060 (+) 2364 WP_277576162.1 endonuclease MutS2 Machinery gene
  P3T66_RS01995 (P3T66_01995) trxA 427200..427511 (+) 312 WP_011374103.1 thioredoxin -
  P3T66_RS02000 (P3T66_02000) - 427713..427862 (+) 150 WP_035145780.1 teichoic acid D-Ala incorporation-associated protein DltX -
  P3T66_RS02005 (P3T66_02005) dltA 427886..429412 (+) 1527 WP_035145773.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  P3T66_RS02010 (P3T66_02010) dltB 429405..430613 (+) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  P3T66_RS02015 (P3T66_02015) dltC 430643..430879 (+) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87636.87 Da        Isoelectric Point: 6.1611

>NTDB_id=732129 P3T66_RS01990 WP_277576162.1 424697..427060(+) (mutS/mutS2) [Latilactobacillus sakei strain PMC104]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMAKAKEKANAIVEKAEVKADKVITKLRDMQMNQGARIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYSQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=732129 P3T66_RS01990 WP_277576162.1 424697..427060(+) (mutS/mutS2) [Latilactobacillus sakei strain PMC104]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGCTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGAATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCGCAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAGGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGTAACGACCGCTACGTGATTCCTGTTAAACAAGAATACCGCGGCCAATTCGGTGGTGTGGTACATG
ATCAAAGTGCCAGTGGGCAAACCCTATTCATGGAACCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAACAACAAGAAATCGAACGGATTTTGGCGGAATTATCAGAAGCCATCATGCCGGAACGTCACAATATTTTAGC
GAATGCTGAATTATTGGGTCAACTTGATTTCGTGAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAGGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTAACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACGTT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAAGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACTCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTGCCTGGTCGGAGTAATGCGTTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGGCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGGCGAAGGCTAAGGAAAAAGCGAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTACGTGATATGCAGATGAATCAAGGCGCACGGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAGGTCCTCCAACGGGCTAAGCGGCGTCAAACGCTT
AAAGTTGGGGATGACGTCTTGGTCACGTCTTACAGCCAACGAGGCACTTTAATTCGCCAAGTCGATTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCTAATGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTGACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGAGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGTAATGGTGCAACCATTGTGACATTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.447

100

0.465