Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   N5069_RS15815 Genome accession   NZ_CP104728
Coordinates   3214251..3216683 (-) Length   810 a.a.
NCBI ID   WP_261612675.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain HJ.T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3209251..3221683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5069_RS15805 (N5069_15805) corA 3211262..3212227 (-) 966 WP_036127283.1 magnesium/cobalt transporter CorA -
  N5069_RS15810 (N5069_15810) hpaB 3212694..3214127 (-) 1434 WP_036149205.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  N5069_RS15815 (N5069_15815) recD2 3214251..3216683 (-) 2433 WP_261612675.1 ATP-dependent RecD-like DNA helicase Machinery gene
  N5069_RS15820 (N5069_15820) hisA 3216872..3217639 (+) 768 WP_150907095.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  N5069_RS15825 (N5069_15825) - 3217636..3217923 (+) 288 WP_008181526.1 hypothetical protein -
  N5069_RS15830 (N5069_15830) - 3218194..3218925 (+) 732 WP_036149211.1 GTP pyrophosphokinase -
  N5069_RS15835 (N5069_15835) - 3219000..3220442 (-) 1443 WP_150907094.1 MDR family MFS transporter -
  N5069_RS15840 (N5069_15840) - 3220633..3221292 (-) 660 WP_261612676.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90840.43 Da        Isoelectric Point: 4.9642

>NTDB_id=731637 N5069_RS15815 WP_261612675.1 3214251..3216683(-) (recD2) [Lysinibacillus fusiformis strain HJ.T1]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFIKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVDQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVIVEVEAVLVKQEVVQEAAIEDPKLTVETAPYIHPMIGMD
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=731637 N5069_RS15815 WP_261612675.1 3214251..3216683(-) (recD2) [Lysinibacillus fusiformis strain HJ.T1]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATTGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTGAAAATTCAAGAGACAAACTTACAGTATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTGAAACAGCATCCTAAATATGGTGCACAA
TTCCAAATCGAGACATTTATAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATCGGGAAAAAAACGGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATCCATCGCACGATTGAGCAAAATCTTGGTTTA
GAACGGGTAATGATCCAGCTAAATGAATGGGGCTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTATCGAACTGA
AGCCATTGAATTACTAACTGAAAACCCATATCGCTTAATAGAAGATGTGGAAGGGGTAGGGTTCTTTCGAGCAGATGAGC
TTGGTGCCAAATTAGGCATTACCGGAAAACATCCTGACCGTGTCAAAGCAGCGATTTTCCATGTTTTAAATACGGCTGCA
CTATCTGACGGGCATGTTTATCTAGATGCGGAGCATGTTCTACCACTTGTAAAGGAAATGCTTGAACAAAGCCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATCGAGCTACGAGAAGAAGGCAAAATTTGTGGGGAAGAAACAAGAT
TATATTTACCCTCTCTTTATTTTTCTGAGGTGGGAATTGCTTCTAAAATATTGACGCTTGTTGAACGAAATAGCAAGGCT
GAGCATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCATGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCTATTATCCTTTGTGCACCCACTGGGCGAGCTGCGAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACTGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTCACAGGTAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACGTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTGTTGAAGGATTTATTAGCATCCAAGCAGCTTCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCATCCGTCGATCAGGTTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTTGCTAAGGGGCAAGAAATTCGTAATATACAAGTATTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACATATCGAATAAAGGATAAAGTTCTGCAGCTCGTCAATCAGCCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATAAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATTGTCTCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCTAAAATGCTGCGGCGTAATCTTTTGTACACAGGTATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCCGATGTCCTGGCAGATGGTTTGCAGCGTACAGACGATTTACAGCGTTTTAC
TTCGTTGCGCGCTCGATTAAATCCAATGGATGTCGACGAAGTCATTGTTGAAGTCGAGGCAGTTCTAGTAAAACAAGAGG
TTGTGCAAGAAGCGGCTATCGAGGACCCTAAATTAACAGTAGAAACAGCTCCTTATATTCATCCAATGATTGGTATGGAT
GATGTCTCCCCCTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.147

100

0.525