Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | N5P33_RS22720 | Genome accession | NZ_CP104720 |
| Coordinates | 4878783..4879655 (+) | Length | 290 a.a. |
| NCBI ID | WP_034071571.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain NY4593 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4873783..4884655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5P33_RS22695 (N5P33_22695) | nadC | 4874124..4874972 (+) | 849 | WP_034071563.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| N5P33_RS22705 (N5P33_22705) | pilA | 4875171..4875623 (-) | 453 | WP_034071565.1 | pilin | Machinery gene |
| N5P33_RS22710 (N5P33_22710) | pilB | 4875855..4877555 (+) | 1701 | WP_034071567.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| N5P33_RS22715 (N5P33_22715) | pilC | 4877559..4878779 (+) | 1221 | WP_034071569.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| N5P33_RS22720 (N5P33_22720) | pilD | 4878783..4879655 (+) | 873 | WP_034071571.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| N5P33_RS22725 (N5P33_22725) | coaE | 4879652..4880263 (+) | 612 | WP_034071573.1 | dephospho-CoA kinase | - |
| N5P33_RS22730 (N5P33_22730) | yacG | 4880260..4880460 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| N5P33_RS22735 (N5P33_22735) | - | 4880497..4880706 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| N5P33_RS22740 (N5P33_22740) | - | 4880812..4881501 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| N5P33_RS22745 (N5P33_22745) | - | 4881498..4881968 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| N5P33_RS22750 (N5P33_22750) | - | 4881965..4882390 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| N5P33_RS22755 (N5P33_22755) | - | 4882523..4883152 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| N5P33_RS22760 (N5P33_22760) | - | 4883149..4883598 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| N5P33_RS22765 (N5P33_22765) | - | 4883624..4883794 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31805.87 Da Isoelectric Point: 7.7068
>NTDB_id=731523 N5P33_RS22720 WP_034071571.1 4878783..4879655(+) (pilD) [Pseudomonas aeruginosa strain NY4593]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVLGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVLGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=731523 N5P33_RS22720 WP_034071571.1 4878783..4879655(+) (pilD) [Pseudomonas aeruginosa strain NY4593]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GCTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GCTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |