Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GZN30_RS13465 | Genome accession | NZ_AP019657 |
| Coordinates | 2984626..2985342 (+) | Length | 238 a.a. |
| NCBI ID | WP_075652062.1 | Uniprot ID | - |
| Organism | Vibrio ponticus strain DSM 16217 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2979626..2990342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZN30_RS13445 | greB | 2980204..2980686 (+) | 483 | WP_075652054.1 | transcription elongation factor GreB | - |
| GZN30_RS13450 | - | 2980758..2983079 (+) | 2322 | WP_075652056.1 | Tex family protein | - |
| GZN30_RS13455 | - | 2983169..2983639 (-) | 471 | WP_075652058.1 | ATP-dependent Lon protease | - |
| GZN30_RS13460 | bioH | 2983769..2984560 (-) | 792 | WP_075652060.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| GZN30_RS13465 | comF | 2984626..2985342 (+) | 717 | WP_075652062.1 | ComF family protein | Machinery gene |
| GZN30_RS13470 | nfuA | 2985434..2986021 (+) | 588 | WP_075652064.1 | Fe-S biogenesis protein NfuA | - |
| GZN30_RS13475 | nudE | 2986234..2986782 (+) | 549 | WP_075652066.1 | ADP compounds hydrolase NudE | - |
| GZN30_RS13480 | cysQ | 2986808..2987635 (+) | 828 | WP_075652068.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
Sequence
Protein
Download Length: 238 a.a. Molecular weight: 27222.55 Da Isoelectric Point: 8.7631
>NTDB_id=73133 GZN30_RS13465 WP_075652062.1 2984626..2985342(+) (comF) [Vibrio ponticus strain DSM 16217]
MLTQWWQKNRQRLVAHYCQHCGLALEAREGSSSLIWLLCRRCQEALQVPRCRCCGIACLQEVDYCGQCLTSPPLWRHLYC
VGDYTPPLSHYVQRLKFNQQLHQADVLAQMLAQQITSDVEAITFVPLHWRRQFGRGFNQSELIARALAKRLGLPCIGLFK
RTRATKAQLGMSRKQRQQNLTNAFELSEINRYSSLAIVDDVVTTGSTVQQLCKLLLDAGAKSVDIYCICRTPEPHSER
MLTQWWQKNRQRLVAHYCQHCGLALEAREGSSSLIWLLCRRCQEALQVPRCRCCGIACLQEVDYCGQCLTSPPLWRHLYC
VGDYTPPLSHYVQRLKFNQQLHQADVLAQMLAQQITSDVEAITFVPLHWRRQFGRGFNQSELIARALAKRLGLPCIGLFK
RTRATKAQLGMSRKQRQQNLTNAFELSEINRYSSLAIVDDVVTTGSTVQQLCKLLLDAGAKSVDIYCICRTPEPHSER
Nucleotide
Download Length: 717 bp
>NTDB_id=73133 GZN30_RS13465 WP_075652062.1 2984626..2985342(+) (comF) [Vibrio ponticus strain DSM 16217]
ATGTTAACGCAATGGTGGCAGAAAAACAGGCAGCGATTGGTTGCACATTATTGCCAGCATTGTGGCTTGGCGCTTGAGGC
AAGAGAGGGCTCATCGAGCTTGATTTGGTTGCTGTGTCGACGTTGCCAAGAGGCACTGCAGGTACCGCGCTGTCGTTGTT
GTGGTATCGCTTGCTTACAAGAGGTCGACTATTGTGGGCAGTGCTTAACATCCCCTCCGCTATGGCGACACTTATATTGC
GTTGGTGATTACACCCCGCCACTTTCGCACTACGTGCAGCGACTTAAGTTTAACCAGCAATTGCATCAAGCCGATGTTTT
AGCGCAGATGCTGGCGCAGCAAATTACCTCTGACGTTGAGGCGATCACTTTTGTTCCGCTACATTGGCGGCGTCAGTTTG
GGCGTGGGTTTAATCAGAGTGAATTGATTGCGAGAGCTTTAGCAAAACGGCTCGGTTTGCCTTGTATTGGGCTATTTAAA
CGTACTCGCGCCACCAAAGCACAGTTGGGTATGAGCCGTAAGCAGAGGCAACAAAATCTTACAAATGCGTTTGAGTTGTC
TGAAATCAACCGCTATTCCTCGCTGGCGATTGTTGATGATGTGGTGACGACTGGCAGCACCGTTCAGCAATTATGCAAAT
TACTGCTTGATGCCGGAGCCAAAAGCGTTGATATTTATTGCATCTGCCGTACTCCTGAACCGCATAGTGAGCGATAA
ATGTTAACGCAATGGTGGCAGAAAAACAGGCAGCGATTGGTTGCACATTATTGCCAGCATTGTGGCTTGGCGCTTGAGGC
AAGAGAGGGCTCATCGAGCTTGATTTGGTTGCTGTGTCGACGTTGCCAAGAGGCACTGCAGGTACCGCGCTGTCGTTGTT
GTGGTATCGCTTGCTTACAAGAGGTCGACTATTGTGGGCAGTGCTTAACATCCCCTCCGCTATGGCGACACTTATATTGC
GTTGGTGATTACACCCCGCCACTTTCGCACTACGTGCAGCGACTTAAGTTTAACCAGCAATTGCATCAAGCCGATGTTTT
AGCGCAGATGCTGGCGCAGCAAATTACCTCTGACGTTGAGGCGATCACTTTTGTTCCGCTACATTGGCGGCGTCAGTTTG
GGCGTGGGTTTAATCAGAGTGAATTGATTGCGAGAGCTTTAGCAAAACGGCTCGGTTTGCCTTGTATTGGGCTATTTAAA
CGTACTCGCGCCACCAAAGCACAGTTGGGTATGAGCCGTAAGCAGAGGCAACAAAATCTTACAAATGCGTTTGAGTTGTC
TGAAATCAACCGCTATTCCTCGCTGGCGATTGTTGATGATGTGGTGACGACTGGCAGCACCGTTCAGCAATTATGCAAAT
TACTGCTTGATGCCGGAGCCAAAAGCGTTGATATTTATTGCATCTGCCGTACTCCTGAACCGCATAGTGAGCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
50 |
99.16 |
0.496 |
| comF | Vibrio campbellii strain DS40M4 |
42.562 |
100 |
0.433 |