Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5936_RS02785 Genome accession   NZ_CP104659
Coordinates   603630..604226 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 2020CK-00096     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 598630..609226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5936_RS02765 (N5936_02765) - 598822..600579 (-) 1758 WP_261653722.1 Lon protease family protein -
  N5936_RS02770 (N5936_02770) matP 600765..601217 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  N5936_RS02775 (N5936_02775) ompA 601349..602419 (-) 1071 WP_002898408.1 porin OmpA -
  N5936_RS02780 (N5936_02780) sulA 602772..603281 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  N5936_RS02785 (N5936_02785) sxy/tfoX 603630..604226 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  N5936_RS02790 (N5936_02790) yccS 604240..606375 (-) 2136 WP_021465041.1 YccS family putative transporter -
  N5936_RS02795 (N5936_02795) - 606393..606839 (-) 447 WP_002898425.1 YccF domain-containing protein -
  N5936_RS02800 (N5936_02800) helD 606964..609018 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=731266 N5936_RS02785 WP_004179217.1 603630..604226(+) (sxy/tfoX) [Klebsiella pneumoniae strain 2020CK-00096]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=731266 N5936_RS02785 WP_004179217.1 603630..604226(+) (sxy/tfoX) [Klebsiella pneumoniae strain 2020CK-00096]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51