Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   N5980_RS06255 Genome accession   NZ_CP104651
Coordinates   1275443..1276069 (+) Length   208 a.a.
NCBI ID   WP_005236133.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270443..1281069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS06220 (N5980_06215) kdsB 1270743..1271504 (+) 762 WP_005236146.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5980_RS06225 (N5980_06220) - 1271519..1272499 (+) 981 WP_005236144.1 hypothetical protein -
  N5980_RS06230 (N5980_06225) - 1272517..1272858 (+) 342 WP_005236142.1 PilZ domain-containing protein -
  N5980_RS06235 (N5980_06230) - 1272886..1273659 (+) 774 WP_005236141.1 TatD family hydrolase -
  N5980_RS06240 (N5980_06235) - 1273700..1274305 (+) 606 WP_005236135.1 TetR/AcrR family transcriptional regulator -
  N5980_RS06245 (N5980_06240) - 1274324..1274872 (+) 549 WP_005236134.1 pilus assembly FimT family protein -
  N5980_RS06250 (N5980_06245) gspI 1274862..1275446 (+) 585 WP_171065451.1 type II secretion system minor pseudopilin GspI -
  N5980_RS06255 (N5980_06250) xcpW 1275443..1276069 (+) 627 WP_005236133.1 type II secretion system minor pseudopilin GspJ Machinery gene
  N5980_RS06260 (N5980_06255) gspK 1276084..1277055 (+) 972 WP_261635454.1 type II secretion system minor pseudopilin GspK -
  N5980_RS06265 (N5980_06260) - 1277214..1277810 (+) 597 WP_005236131.1 6-pyruvoyl trahydropterin synthase family protein -
  N5980_RS06270 (N5980_06265) ung 1277856..1278569 (+) 714 WP_005236130.1 uracil-DNA glycosylase -
  N5980_RS06275 (N5980_06270) - 1278566..1279687 (+) 1122 WP_004783991.1 enoyl-CoA hydratase/isomerase family protein -
  N5980_RS06280 (N5980_06275) tadA 1279694..1280209 (+) 516 WP_005236129.1 tRNA adenosine(34) deaminase TadA -
  N5980_RS06285 (N5980_06280) - 1280272..1280706 (+) 435 WP_004783989.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23970.25 Da        Isoelectric Point: 4.7542

>NTDB_id=731250 N5980_RS06255 WP_005236133.1 1275443..1276069(+) (xcpW) [Acinetobacter variabilis strain 2021CK-01005]
MKSKGFTLVELLVAIAIFAVLSALSWKVFDYIIQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSDVEQFQIVVLNPNEMTQWPD
SSFDLNQVEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=731250 N5980_RS06255 WP_005236133.1 1275443..1276069(+) (xcpW) [Acinetobacter variabilis strain 2021CK-01005]
ATGAAGTCAAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTGTCTGCTCTAAGCTGGAA
AGTATTTGATTATATTATACAAACCAAAGACCGTAATGCGGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTACAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGGCGTTTTAACTTTAGTAAGACTGGAGTTACCGATCCTCTGGAAGAGGGGATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTATATCGCTTGAAATACCGGAATTTAAACCAGACCGGTCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGATGTTGAGCAGTTTCAGATCGTAGTGCTTAATCCGAATGAAATGACCCAATGGCCAGAC
TCATCATTTGATTTAAATCAGGTTGAGCAAAAACAGCGCTTGCCCAAAGGCATTAAAATCAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.701

96.635

0.577