Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   N5C46_RS22175 Genome accession   NZ_CP104558
Coordinates   4329687..4332083 (+) Length   798 a.a.
NCBI ID   WP_261750271.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4324687..4337083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS22155 (N5C46_22155) cymR 4326102..4326521 (+) 420 WP_034757332.1 cysteine metabolism transcriptional regulator CymR -
  N5C46_RS22160 (N5C46_22160) - 4326535..4327677 (+) 1143 WP_261750269.1 cysteine desulfurase family protein -
  N5C46_RS22165 (N5C46_22165) mnmA 4327728..4328843 (+) 1116 WP_061811167.1 tRNA 2-thiouridine(34) synthase MnmA -
  N5C46_RS22170 (N5C46_22170) - 4328998..4329669 (+) 672 WP_261750270.1 tetratricopeptide repeat protein -
  N5C46_RS22175 (N5C46_22175) recD2 4329687..4332083 (+) 2397 WP_261750271.1 ATP-dependent RecD-like DNA helicase Machinery gene
  N5C46_RS22180 (N5C46_22180) - 4332218..4332814 (+) 597 WP_261750272.1 biotin transporter BioY -
  N5C46_RS22185 (N5C46_22185) bioB 4332830..4333837 (+) 1008 WP_261750273.1 biotin synthase BioB -
  N5C46_RS22190 (N5C46_22190) - 4334032..4334217 (+) 186 WP_034757353.1 hypothetical protein -
  N5C46_RS22195 (N5C46_22195) - 4334224..4334364 (+) 141 WP_094075150.1 YrzQ family protein -
  N5C46_RS22200 (N5C46_22200) - 4334505..4335599 (+) 1095 WP_261750274.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90345.02 Da        Isoelectric Point: 4.8334

>NTDB_id=730537 N5C46_RS22175 WP_261750271.1 4329687..4332083(+) (recD2) [Rossellomorea vietnamensis strain RL-WG62]
MSQQDSLKLFGEEEIYIKGRHLVTIFHNEENLYSVVRIRVDETNDSYEDKEAVVTGNFPKIHEDETYIFYGRFQEHPRFG
MQFHAKHFKKEIPQTTQGVVHYLSSDLFKGIGKKTAEKIVEHIGENAISKILENPSLLDEIPKLPKEKAKSIYDTLSEHQ
GLERVMIMLNELGFGPQISMKVYQAYKEQALEIIQKNPYKLVEDIEGIGFTRADELGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPERIEYTDISTQLVSLEEESKVIGEGTKVYLPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIQGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGQEGFQSDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPDDIQVIF
VGDEDQLPSVGPGQVLKDLLNSESVPTVRLTDIYRQEEGSSIIELAHYMKRGQVPADLTKQQKDRSFFPCRTNQISEVVQ
KVVENAKKKGYSPKDIQVLAPMYRGPAGIDRLNELLQEIFNRNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIG
EIVSIFYAKENTEKQDMIIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRS
KQFLILCGELDAFKLGVEREDDFLRKTTLSEKLRVILDHEGRGEEDSSEGDVPIEEVLLNEDPMIGMEGISPYDFMKA

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=730537 N5C46_RS22175 WP_261750271.1 4329687..4332083(+) (recD2) [Rossellomorea vietnamensis strain RL-WG62]
TTGAGCCAGCAAGACTCTTTAAAGCTGTTTGGTGAGGAAGAAATATATATAAAAGGAAGGCATCTTGTCACGATTTTTCA
TAATGAGGAGAACCTTTATTCGGTTGTCAGAATCCGTGTGGATGAAACAAATGATTCTTATGAGGATAAAGAAGCGGTCG
TAACCGGGAATTTCCCTAAGATACATGAAGATGAGACCTATATATTTTATGGGAGATTCCAAGAGCATCCAAGATTCGGC
ATGCAGTTTCATGCCAAACATTTCAAGAAAGAAATCCCCCAAACCACACAGGGTGTCGTCCATTATTTATCAAGTGATCT
CTTCAAAGGAATCGGGAAAAAAACAGCTGAAAAGATCGTTGAGCATATCGGGGAAAATGCGATCAGTAAAATACTCGAAA
ATCCAAGCCTTCTAGATGAAATTCCAAAGCTTCCAAAGGAAAAGGCGAAGAGTATCTATGATACGTTATCCGAGCATCAG
GGACTCGAGCGGGTTATGATCATGTTGAATGAGCTAGGATTCGGTCCCCAGATTTCCATGAAGGTCTATCAGGCTTACAA
AGAGCAGGCACTTGAAATCATTCAAAAGAATCCTTATAAGCTTGTGGAGGATATTGAAGGGATCGGGTTTACCCGTGCAG
ATGAATTGGGGTCCAAAATTGGTTTGACGGGCAGTCACCCGGACCGGATCAAAGCCGGCTGCTTATATACCCTGGAACAA
ACATGTGTCAAGCAGGGTCACGTGTATCTTGAAGCGGAGGAACTCATTGTAACGGTGAAAGAGCTCCTTGAGAAAAGTCA
GCCGGAAAGAATCGAATACACGGACATTTCCACTCAATTGGTTTCCTTGGAGGAAGAAAGCAAAGTCATCGGTGAAGGGA
CGAAGGTATATCTTCCTTCCCTCTATTTCTCTGAAAAGGGGATTGTGACCAATATCGAAAAGATATTGTCCCAGACACAG
TATAAAGATCAATTCCCTCAGTCTGAATTCCTTCTGTCACTGGGTGCCCTGGAGGACAGGCTAGGGGTGCAGTATGCGCC
TTCTCAAAAGGAAGCCATCGAGACGGCATTGATGTCTCCCATGCTCCTGTTGACGGGGGGACCGGGTACGGGGAAGACCA
CTGTCATTCAGGGGATCGTGGAACTGTTCGCGGACCTTCACGGGTGTTCTTTGGATCCCAAGGATTACAAAGATGAACCG
TTCCCCGTATTGCTCACGGCCCCTACAGGACGTGCAGCTAAGCGGATGACAGAATCCACGGGGCTGCCGGCCATGACGAT
CCACCGACTTCTCGGATGGAATGGTCAGGAAGGATTTCAGAGCGATGAAGAACGGGCCATCGAGGGCAAGCTGTTGATTG
TGGACGAAGTGTCCATGGTCGACACCTGGCTGGCCCATCAATTGCTGAAGGCTCTGCCTGATGATATTCAAGTGATATTT
GTCGGGGATGAAGATCAATTGCCGTCCGTCGGTCCGGGTCAGGTGTTGAAGGACTTACTGAATTCGGAAAGCGTGCCGAC
TGTCAGGTTGACGGATATATACAGGCAGGAAGAGGGTTCCTCGATCATTGAACTTGCTCACTATATGAAAAGGGGACAGG
TTCCCGCCGATTTGACCAAACAGCAAAAAGATCGTTCGTTCTTTCCCTGCAGGACGAATCAGATTTCCGAGGTCGTTCAG
AAAGTGGTGGAAAATGCCAAGAAGAAGGGCTATTCACCTAAAGATATCCAGGTGCTTGCCCCTATGTACAGGGGTCCTGC
AGGAATCGACCGCTTGAATGAACTTCTACAGGAAATCTTTAATCGTAATGATGGGACCCGCAAAGAAATCGCCTTCGGTG
ACGTCAAATACCGGATCGGGGATAAGGTCCTTCAGCTGGTCAATCAGCCTGAAAACAATGTTTTCAACGGGGATATCGGT
GAAATCGTTTCGATCTTCTATGCAAAGGAAAATACGGAGAAACAGGATATGATCATCGTTTCGTATGAAGGAAATGAGGT
CACATATACACGGCAGGACCTCATGCAAATCACCCATGCGTATTGCTGCTCGATCCATAAATCCCAGGGAAGCGAGTTTC
CCATTGTCATTTTACCCGTCGTGAAGAGCTATTACCGGATGTTACGGAGAAATCTCCTATACACGGCCATCACAAGGAGC
AAGCAGTTCCTCATTCTCTGCGGGGAGCTGGACGCTTTCAAGCTTGGAGTGGAAAGGGAAGATGATTTTCTCAGGAAAAC
GACCTTGAGTGAGAAGCTGAGGGTCATACTGGATCATGAGGGTCGTGGGGAAGAGGATTCATCAGAGGGGGACGTACCCA
TTGAAGAAGTCCTGCTGAATGAAGACCCGATGATTGGAATGGAAGGGATCAGCCCTTACGATTTCATGAAAGCATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.06

99.749

0.619