Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NQS38_RS05635 Genome accession   NZ_CP104496
Coordinates   1191202..1192701 (-) Length   499 a.a.
NCBI ID   WP_020831172.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain Gj707     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186202..1197701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS38_RS05605 (NQS38_05605) - 1186709..1187359 (-) 651 WP_016724261.1 LON peptidase substrate-binding domain-containing protein -
  NQS38_RS05610 (NQS38_05610) rapZ 1187437..1188327 (-) 891 WP_011000365.1 RNase adapter RapZ -
  NQS38_RS05615 (NQS38_05615) - 1188421..1188756 (-) 336 WP_020425146.1 PsiF family protein -
  NQS38_RS05620 (NQS38_05620) hprK 1188947..1189921 (-) 975 WP_011000367.1 HPr(Ser) kinase/phosphatase -
  NQS38_RS05625 (NQS38_05625) ptsN 1189992..1190447 (-) 456 WP_003269869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NQS38_RS05630 (NQS38_05630) hpf 1190797..1191150 (-) 354 WP_011000368.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQS38_RS05635 (NQS38_05635) rpoN/rpoN1 1191202..1192701 (-) 1500 WP_020831172.1 RNA polymerase factor sigma-54 Machinery gene
  NQS38_RS05640 (NQS38_05640) lptB 1192799..1193587 (-) 789 WP_016724264.1 LPS export ABC transporter ATP-binding protein -
  NQS38_RS05645 (NQS38_05645) lptA 1193621..1194196 (-) 576 WP_011000371.1 lipopolysaccharide transport periplasmic protein LptA -
  NQS38_RS05650 (NQS38_05650) lptC 1194265..1194897 (-) 633 WP_011000372.1 LPS export ABC transporter periplasmic protein LptC -
  NQS38_RS05655 (NQS38_05655) - 1194899..1195486 (-) 588 WP_011000373.1 KdsC family phosphatase -
  NQS38_RS05660 (NQS38_05660) - 1195525..1196508 (-) 984 WP_016724265.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55213.53 Da        Isoelectric Point: 4.8037

>NTDB_id=730043 NQS38_RS05635 WP_020831172.1 1191202..1192701(-) (rpoN/rpoN1) [Ralstonia pseudosolanacearum strain Gj707]
MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVNALQSSSATPLPTE
SPPPAANGADHADTADASYENGSDFDSDYGTERSDWSLDDFARKPQSDEDDRAPMQLREAEPTQREFLMEQLAPLKLSPR
DKGLVIFLIESLDDEGYLTGSLDEILADLPAELEVELDELQAALRMLQSFDPAGIGARSAAECLTLQLQRLDSPAKPLAL
TIVNQHLELLAARDYTRLKKALSVDDGELKAAHELIRSLAPFPGHAFGRAEADFVVPDVVVRKTAAGWMAQLNPDVMPRL
RINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLH
ESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRT
VAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=730043 NQS38_RS05635 WP_020831172.1 1191202..1192701(-) (rpoN/rpoN1) [Ralstonia pseudosolanacearum strain Gj707]
ATGAAACAGTCGCTCCAGCTCCGTCTCTCCCAGCATCTGGCGCTCACGCCACAACTGCAGCAGTCGATCCGGCTGCTGCA
GTTGTCGACCATCGAGCTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAACCCGCTGCTCGAGCGCGAGAACGAGTGGC
TCGACACCTCCGCGCGCATCGGCGCCGACGGCTCGGTCAACGCCCTGCAGAGCAGCAGCGCCACCCCGCTGCCGACCGAA
TCGCCGCCGCCCGCCGCCAACGGTGCGGACCATGCCGACACAGCCGACGCATCGTACGAAAACGGCAGCGATTTCGACAG
CGACTACGGCACCGAGCGGTCCGACTGGAGCCTCGACGACTTCGCGCGCAAACCCCAGTCCGACGAAGACGACCGCGCGC
CGATGCAGCTGCGCGAGGCCGAACCCACGCAGCGCGAATTCCTGATGGAACAACTCGCGCCGCTCAAGCTGTCCCCGCGC
GACAAGGGCCTCGTCATCTTCCTGATCGAATCGCTGGACGACGAAGGCTACCTGACCGGCTCGCTCGATGAGATCCTCGC
CGACCTGCCGGCCGAACTCGAGGTCGAGCTCGACGAATTGCAGGCCGCGCTGCGGATGCTGCAGAGCTTCGATCCGGCCG
GCATCGGTGCGCGCTCGGCGGCCGAATGCCTGACGCTGCAGCTGCAGCGCCTGGACTCCCCGGCCAAGCCGCTGGCGCTG
ACCATCGTCAACCAGCATCTCGAACTGCTCGCCGCGCGCGACTACACGCGGCTGAAGAAAGCGCTGTCCGTCGATGATGG
CGAGCTGAAGGCCGCGCATGAGCTGATCCGCTCGCTGGCGCCCTTTCCTGGCCACGCCTTCGGGCGGGCCGAGGCCGACT
TCGTCGTGCCCGACGTGGTGGTGCGCAAGACCGCCGCCGGCTGGATGGCACAGCTGAACCCCGACGTGATGCCACGCCTG
CGCATCAACGACATGTATGCGCAGATCCTGCGCAGCAGCCGTGGCGAATCGGGTGCCGCCAACCTGCAGCAGAAGCTGCA
GGAAGCGCGCTGGCTGATCAAAAATATCCAGCAGCGCTTCGACACCATCCTGCGTGTCTCGCAAGCAATTGTCGAACGTC
AAAAGAGCTTTTTCACGCACGGTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACACTGGGTCTACAC
GAGTCCACGATCTCCCGTGTGACGACCAACAAATACATGGCAACCCCCATGGGGACCTTCGAGCTGAAGTACTTCTTCGG
CAGCCATGTATCGACGGAAACCGGCGGGGCCGCGTCATCCACCGCGATACGCGCGCTCATCAAGCAACTTGTAGGAGCCG
AAGACCCGAAGAATCCTCTGTCCGATAGCAGAATTGCCGAGCTGTTAGGCGAACAAGGATTCGTGGTGGCCCGTCGGACG
GTGGCCAAGTACCGCGAAGCCCTCAAGATCCCAGCAGTGAATCTGCGCAAGTCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

99.8

100

0.998