Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N4627_RS04855 Genome accession   NZ_CP104399
Coordinates   986669..987499 (+) Length   276 a.a.
NCBI ID   WP_098045088.1    Uniprot ID   -
Organism   Limosilactobacillus vaginalis strain AM_LB9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 981669..992499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4627_RS04845 (N4627_04845) - 982277..984592 (-) 2316 WP_390893924.1 ATP-binding protein -
  N4627_RS04850 (N4627_04850) - 984712..986487 (-) 1776 WP_124031333.1 oleate hydratase -
  N4627_RS04855 (N4627_04855) endA 986669..987499 (+) 831 WP_098045088.1 DNA/RNA non-specific endonuclease Machinery gene
  N4627_RS04860 (N4627_04860) - 987559..988938 (-) 1380 WP_040531214.1 amino acid permease -
  N4627_RS04865 (N4627_04865) - 989229..990743 (-) 1515 WP_124031334.1 hypothetical protein -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30608.35 Da        Isoelectric Point: 10.5992

>NTDB_id=729592 N4627_RS04855 WP_098045088.1 986669..987499(+) (endA) [Limosilactobacillus vaginalis strain AM_LB9]
MKFRKRLYHLLFALVGLLIVTGVIQQPKLTSASLNHISKIAYWKKTSHSYQKTLPPTQEQASSVLTPAVRQQLGTAITWN
KAGAFIINNNQTNLNAKIASAPYAVNHLDRQGRAWQGDAWLNRTTRQYKNRTATGNGATNWRPAGFLQAHNLKGGYNHAY
DRGHLLGYALVGGIHGFDASESNPSNIATQTAWANEARNKNSTGQNYYEGLVRKALDQNKQVRYRVTNIYDGNNIVPAGA
HIEAKSSDGSLEYNVFVPNVQRNITINYSTGAVKQN

Nucleotide


Download         Length: 831 bp        

>NTDB_id=729592 N4627_RS04855 WP_098045088.1 986669..987499(+) (endA) [Limosilactobacillus vaginalis strain AM_LB9]
ATGAAATTTAGAAAACGACTCTATCACCTTTTATTTGCTCTTGTTGGTTTATTAATAGTTACTGGAGTTATCCAGCAGCC
TAAGCTAACGAGTGCTTCATTAAACCATATTAGTAAAATTGCATACTGGAAGAAAACTAGTCACAGCTATCAAAAAACAT
TGCCACCAACTCAGGAACAGGCTAGTTCAGTTTTGACTCCGGCTGTTCGCCAACAACTTGGTACTGCAATTACTTGGAAT
AAAGCTGGTGCATTTATTATTAATAATAACCAAACTAATCTTAACGCTAAGATTGCAAGTGCTCCCTATGCTGTAAATCA
TCTTGACCGCCAAGGAAGAGCCTGGCAAGGTGATGCCTGGTTAAACAGAACAACTCGTCAATATAAAAATCGAACTGCTA
CTGGGAATGGTGCTACGAATTGGCGACCAGCTGGTTTTCTTCAGGCTCATAATCTTAAGGGTGGGTACAATCACGCATAC
GATCGGGGACACCTTCTTGGTTATGCGCTAGTTGGCGGTATTCATGGATTTGATGCATCCGAATCAAATCCATCTAATAT
TGCCACGCAAACTGCCTGGGCAAATGAAGCACGAAATAAAAATTCAACAGGACAAAACTACTATGAAGGTCTGGTCCGAA
AAGCACTAGATCAAAATAAACAAGTTCGCTACCGGGTCACAAATATTTATGACGGTAATAATATTGTTCCGGCTGGTGCT
CACATCGAAGCTAAATCTAGCGATGGCTCTTTAGAATATAATGTTTTCGTGCCAAATGTCCAAAGAAATATTACGATTAA
CTATTCAACTGGCGCAGTAAAGCAAAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.009

83.696

0.486
  endA Streptococcus pneumoniae D39

58.009

83.696

0.486
  endA Streptococcus pneumoniae R6

58.009

83.696

0.486
  endA Streptococcus pneumoniae TIGR4

58.009

83.696

0.486