Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N4599_RS01600 Genome accession   NZ_CP104398
Coordinates   316979..317824 (-) Length   281 a.a.
NCBI ID   WP_062812629.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain AM_LB10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 311979..322824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4599_RS01580 (N4599_01580) - 312773..313249 (-) 477 WP_260901519.1 nucleoside 2-deoxyribosyltransferase -
  N4599_RS01585 (N4599_01585) - 313281..313442 (-) 162 WP_260901521.1 hypothetical protein -
  N4599_RS01590 (N4599_01590) - 313439..314335 (-) 897 WP_260901523.1 alpha/beta hydrolase -
  N4599_RS01595 (N4599_01595) - 314369..316678 (-) 2310 WP_260901525.1 ATP-binding protein -
  N4599_RS01600 (N4599_01600) endA 316979..317824 (-) 846 WP_062812629.1 DNA/RNA non-specific endonuclease Machinery gene
  N4599_RS01605 (N4599_01605) - 317940..319325 (-) 1386 WP_260901528.1 amino acid permease -
  N4599_RS01610 (N4599_01610) - 319599..320783 (-) 1185 WP_260901531.1 mucin-binding protein -
  N4599_RS01615 (N4599_01615) - 320890..322665 (-) 1776 WP_062812632.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30876.28 Da        Isoelectric Point: 10.6310

>NTDB_id=729563 N4599_RS01600 WP_062812629.1 316979..317824(-) (endA) [Limosilactobacillus oris strain AM_LB10]
MYRIKKRLWRTILALGLVLLFGGFINQSSGSNTAWAQGIQRLVSWGGNYHSGSQQSLPPTKEQAESVLTPAVRQQLGDSI
SWNGSGAFIVNNNRPQLNANISSAPYAVNLRDQQGRAWRGDAWLNRTTRQYRNRNETGNGATSWRPAGFLQASNLTGGYR
HAYDRGHLLGYALVGGINRFDASESNPANIATQTAWANEARSSISTGQNYYEGLVRKALDRGKQVRYRVTDIYNGNDVVP
AGAHIEALSSDGSLSFNVFVPNVQRNIKINYATGAVTQLNN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=729563 N4599_RS01600 WP_062812629.1 316979..317824(-) (endA) [Limosilactobacillus oris strain AM_LB10]
ATGTATCGAATTAAAAAGAGACTCTGGCGAACCATCCTCGCCCTTGGATTGGTACTACTGTTCGGCGGTTTCATCAACCA
GTCCAGCGGCAGCAATACCGCCTGGGCGCAGGGCATTCAGCGGCTGGTCTCCTGGGGCGGTAATTACCACAGCGGGAGTC
AGCAAAGCCTACCGCCAACTAAGGAACAGGCGGAGTCAGTACTAACACCGGCCGTCCGCCAGCAGTTAGGGGACTCTATC
AGTTGGAATGGTTCTGGTGCCTTCATCGTCAACAATAACCGGCCGCAGCTGAACGCTAACATTAGCAGCGCGCCATACGC
CGTTAATCTCCGTGACCAGCAGGGCCGGGCATGGCGGGGGGATGCCTGGCTCAATCGCACCACTCGTCAATACCGCAACC
GGAATGAAACTGGTAACGGTGCTACTAGCTGGCGCCCAGCAGGATTTTTACAGGCCAGCAACCTGACTGGAGGTTACCGG
CACGCCTATGACCGGGGGCACTTACTCGGCTACGCCCTAGTCGGGGGGATTAATCGTTTTGACGCCTCCGAATCTAACCC
CGCCAACATCGCCACGCAGACCGCCTGGGCCAATGAGGCCCGCAGTTCGATCTCAACCGGGCAAAACTACTATGAAGGGC
TCGTCCGCAAAGCGCTTGACCGGGGCAAGCAGGTGCGGTACCGGGTCACTGATATATACAACGGTAATGATGTCGTGCCA
GCGGGCGCCCATATTGAGGCACTCTCCAGCGATGGTAGCTTATCTTTCAATGTCTTCGTGCCGAACGTGCAACGGAATAT
TAAAATTAATTACGCCACCGGGGCAGTAACACAATTGAATAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(100-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

57.692

83.274

0.48
  endA Streptococcus pneumoniae D39

57.692

83.274

0.48
  endA Streptococcus pneumoniae R6

57.692

83.274

0.48
  endA Streptococcus pneumoniae TIGR4

57.692

83.274

0.48