Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   N4Q31_RS12520 Genome accession   NZ_CP104391
Coordinates   2432460..2434784 (-) Length   774 a.a.
NCBI ID   WP_260774505.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2427460..2439784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS12505 (N4Q31_12505) dtd 2429109..2429552 (-) 444 WP_024423131.1 D-aminoacyl-tRNA deacylase -
  N4Q31_RS12510 (N4Q31_12510) - 2429571..2431781 (-) 2211 WP_024427858.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  N4Q31_RS12515 (N4Q31_12515) - 2431924..2432436 (-) 513 WP_024423133.1 adenine phosphoribosyltransferase -
  N4Q31_RS12520 (N4Q31_12520) recJ 2432460..2434784 (-) 2325 WP_260774505.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  N4Q31_RS12525 (N4Q31_12525) - 2434866..2435216 (-) 351 WP_039180309.1 lipopolysaccharide assembly LapA domain-containing protein -
  N4Q31_RS12530 (N4Q31_12530) - 2435318..2435806 (-) 489 WP_058838998.1 cation:proton antiporter regulatory subunit -
  N4Q31_RS12535 (N4Q31_12535) secDF 2435968..2438196 (-) 2229 WP_039180313.1 protein translocase subunit SecDF -
  N4Q31_RS12540 (N4Q31_12540) - 2438238..2438534 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87095.71 Da        Isoelectric Point: 4.8870

>NTDB_id=729441 N4Q31_RS12520 WP_260774505.1 2432460..2434784(-) (recJ) [Bacillus safensis strain GX-H6]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAIVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGELPVQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEEAGDDQSAIVVAKVGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVALLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVQAIEEAGMLSPFGMSN
PKPFIMIEDAKLEDIRTIGANHNHIKMSLKDEDKLLDCVGFHQGKLKEEIVPGSRISVIGEMSVNEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKKVSTLDSEKSLVVCFDEATKQNVDIPIHHVHAENVSTFDVYGKYVVFADVPADEQLLKQLLE
NQKPARIYTVFQREEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIENGV
LSIVLDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=729441 N4Q31_RS12520 WP_260774505.1 2432460..2434784(-) (recJ) [Bacillus safensis strain GX-H6]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTCGTAAAAAGAGGACTTGAAGAAGTAGAAGAGGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTCTTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCAGATGGTGTGACAAGTACGTCTGTACTTTTACATACATTAAAAGAGCG
GTCTGCGATAGTAGACTTTTATATTCCAGATCGGTTTAAAGAAGGCTATGGGCCTAATGAACAGGCTTTTCGATATATCA
AGGAGCAAGGAGCATCGCTTGTCATCACGGTTGATACAGGCATTGCTGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGGCTAGACCTGATCATTACAGATCACCATGAACCAAGTGAGGAGCTGCCTGAGGCACTTGCCATTGTCCATCCTAAACA
GCCAGGCTGTGAGTATCCCTTTAAAGAACTTGCTGGTGTAGGTGTAGCGTTTAAAGTGGCGCATGCACTTCTTGGGGAGT
TGCCAGTTCAGCTGTTAGATCTTGCAGCAATCGGGACAATCGCGGATCTTGTACCGCTTCATGATGAGAATAGATGGCTC
GCCAAAAAAGGGCTTATGCAGCTTCGTCAGTCGAATAGACCGGGGCTGAAAGCGTTATTGAAAGAAGCGGGAGCCACTTT
AGAAGAAGCGAACGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCACCTTCTTATGACTGAGGATAAGGATGAAGCAGAAGAGCTCGCTCGTTTTGTACAGGAACTGAATAAAGAA
CGACAAAAGATTGTCAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGGCAGGCGATGACCAGTCTGCGATCGT
TGTAGCGAAAGTTGGCTGGAATCCGGGCGTTGTCGGAATTGTTGCCTCTAAATTGACGGATACTTTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGATGAAGAAACGCAAATGGCAAAAGGATCAGCCCGAAGCATTCCTGGCTTCGATCTATTCTTCCAT
CTAAGCAAATGCCGTGACATCCTGCCGCATTTCGGCGGGCATCCGATGGCAGCAGGGATGACACTTCGAGCGGATGATGT
CGCTTTACTAAGGGAAAGATTAAATCAATATGCCAATGAAACATTGACGGAAGAAGATTTTATTCCCATTCAGCGGGTCG
ATGCTGTGTGTAAGGTAGACGAATTGACGGTTCAAGCGATTGAAGAAGCAGGGATGCTGTCACCATTTGGTATGTCAAAC
CCAAAACCGTTCATTATGATTGAAGATGCGAAGCTTGAAGATATCCGAACAATTGGGGCAAATCACAACCATATTAAAAT
GTCTCTGAAAGACGAAGACAAGCTGCTTGACTGTGTCGGCTTTCACCAAGGGAAATTAAAAGAAGAAATTGTTCCAGGAA
GCCGCATTTCCGTGATTGGAGAAATGTCCGTCAATGAATGGAATAACCGGAAAAAGCCCCAGCTAATGCTAAAAGATGCA
CGAGTTGATGAATGGCAGCTGTTTGATCTGCGAGGGAAAAAGGATTGGGAGAAGAAAGTTTCGACGCTTGATTCTGAAAA
ATCTTTGGTTGTCTGTTTTGATGAAGCAACGAAACAAAACGTCGATATCCCCATTCATCATGTTCATGCAGAAAATGTAT
CAACGTTTGATGTATACGGAAAGTATGTGGTCTTTGCGGATGTTCCGGCAGATGAGCAATTGCTGAAGCAGCTTTTAGAA
AATCAGAAGCCTGCCAGAATTTATACGGTTTTTCAAAGAGAAGAAGATCATTTTATGTCCTCTTTCCCAAGCCGTGATCA
ATTCAAATGGTTTTATGGGTTCTTGTTTAAACGGGGAAGTTTTCCTATCAAAGAACAAGGAATGGAGCTTGCCAAACATA
GAGGCTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACTTGATGCCCCTAAAAAAGATTTAACGGCATCAGCGTCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCTAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

DHHA1 domain (DHHA1)

(314-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.568

100

0.678