Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N4Q31_RS07965 Genome accession   NZ_CP104391
Coordinates   1572507..1573286 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain GX-H6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567507..1578286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS07945 (N4Q31_07945) trmFO 1568211..1569515 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N4Q31_RS07950 (N4Q31_07950) xerC 1569578..1570495 (+) 918 WP_058837707.1 tyrosine recombinase XerC -
  N4Q31_RS07955 (N4Q31_07955) hslV 1570510..1571055 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  N4Q31_RS07960 (N4Q31_07960) hslU 1571072..1572472 (+) 1401 WP_039178511.1 HslU--HslV peptidase ATPase subunit -
  N4Q31_RS07965 (N4Q31_07965) codY 1572507..1573286 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N4Q31_RS07970 (N4Q31_07970) flgB 1573575..1573964 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  N4Q31_RS07975 (N4Q31_07975) flgC 1573964..1574416 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  N4Q31_RS07980 (N4Q31_07980) fliE 1574428..1574745 (+) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  N4Q31_RS07985 (N4Q31_07985) fliF 1574795..1576387 (+) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  N4Q31_RS07990 (N4Q31_07990) fliG 1576399..1577415 (+) 1017 WP_039178520.1 flagellar motor switch protein FliG -
  N4Q31_RS07995 (N4Q31_07995) fliH 1577408..1578172 (+) 765 WP_260775929.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=729428 N4Q31_RS07965 WP_007499612.1 1572507..1573286(+) (codY) [Bacillus safensis strain GX-H6]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=729428 N4Q31_RS07965 WP_007499612.1 1572507..1573286(+) (codY) [Bacillus safensis strain GX-H6]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGTTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCAGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTATCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTGGGGATCACTC
GTTCAGTGATCGTAAACGCATTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTGAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471