Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   N4P52_RS10040 Genome accession   NZ_CP104390
Coordinates   2097763..2100126 (-) Length   787 a.a.
NCBI ID   WP_260831989.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2092763..2105126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS10015 (N4P52_10015) - 2093106..2093756 (-) 651 WP_260831984.1 efflux RND transporter periplasmic adaptor subunit -
  N4P52_RS10020 (N4P52_10020) - 2093764..2094204 (-) 441 WP_260831985.1 MarR family winged helix-turn-helix transcriptional regulator -
  N4P52_RS10025 (N4P52_10025) dtd 2094386..2094826 (-) 441 WP_260831986.1 D-aminoacyl-tRNA deacylase -
  N4P52_RS10030 (N4P52_10030) - 2094840..2097029 (-) 2190 WP_260831987.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  N4P52_RS10035 (N4P52_10035) - 2097251..2097772 (-) 522 WP_260831988.1 adenine phosphoribosyltransferase -
  N4P52_RS10040 (N4P52_10040) recJ 2097763..2100126 (-) 2364 WP_260831989.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  N4P52_RS10045 (N4P52_10045) secDF 2100215..2102479 (-) 2265 WP_104851462.1 protein translocase subunit SecDF -
  N4P52_RS10050 (N4P52_10050) - 2102625..2102945 (-) 321 WP_017551048.1 post-transcriptional regulator -
  N4P52_RS10055 (N4P52_10055) spoVB 2103049..2104593 (+) 1545 WP_017551049.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87843.98 Da        Isoelectric Point: 5.9855

>NTDB_id=729386 N4P52_RS10040 WP_260831989.1 2097763..2100126(-) (recJ) [Heyndrickxia coagulans strain JBI-YZ6.3]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKKE
EPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAYCPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGHLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWVGHVPEDGQAFVVFQKETLRKLPLPDFSVRLVPVATMEEARAFDPANKNIVFLDLPPGPKM
MAALLEGGAPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKRHGDELAAYRGWSRSTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESFTYQKKLAQYQMEKDLLYSSFHELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=729386 N4P52_RS10040 WP_260831989.1 2097763..2100126(-) (recJ) [Heyndrickxia coagulans strain JBI-YZ6.3]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAAAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGTACTGCCATCATGATGGCCGCTTTAAACGATCT
TGGCGCCCATGCTGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTATGGGCCAAATGAAGCGGCTTTCCGCCGGGCGG
CTGAAGAGGGTTTTCAGCTAATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCCTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCAGCCGGGCGCCTGCAGCATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCAGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGATGGGGCCTATTGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGCATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAACTGTCCATCAATGAATGGAATAATATCCGCAAGCCGCAAATGATGGTAAAGGACATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGTCGGGCACGTCCCGGAAGATGG
CCAGGCTTTTGTTGTGTTCCAAAAAGAAACATTGCGGAAACTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTGG
CGACAATGGAAGAGGCAAGGGCATTTGACCCGGCAAATAAAAATATTGTGTTTCTTGATCTTCCGCCAGGCCCGAAGATG
ATGGCGGCACTGCTTGAAGGCGGTGCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTGAAGCGGCACGGGG
ATGAGCTGGCGGCTTACCGCGGCTGGTCGAGAAGTACGATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTTTTACGTATCAGAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCATGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(454-559)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

100

0.531