Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   N4R43_RS00665 Genome accession   NZ_CP104388
Coordinates   112794..113732 (-) Length   312 a.a.
NCBI ID   WP_317141326.1    Uniprot ID   -
Organism   Lactococcus lactis strain LJL7m20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 107794..118732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4R43_RS00640 (N4R43_00640) frr 107911..108468 (-) 558 WP_004254618.1 ribosome recycling factor -
  N4R43_RS00645 (N4R43_00645) pyrH 108681..109397 (-) 717 WP_021464089.1 UMP kinase -
  N4R43_RS00650 (N4R43_00650) - 109482..109934 (-) 453 WP_010906263.1 hypothetical protein -
  N4R43_RS00655 (N4R43_00655) - 110068..111255 (-) 1188 WP_015427114.1 acetate kinase -
  N4R43_RS00660 (N4R43_00660) - 111412..112599 (-) 1188 WP_004254593.1 acetate kinase -
  N4R43_RS00665 (N4R43_00665) comYH 112794..113732 (-) 939 WP_317141326.1 class I SAM-dependent methyltransferase Machinery gene
  N4R43_RS00670 (N4R43_00670) - 113825..114076 (-) 252 WP_004254583.1 DUF3165 family protein -
  N4R43_RS00675 (N4R43_00675) typA 114177..116009 (-) 1833 WP_025016832.1 translational GTPase TypA -
  N4R43_RS00680 (N4R43_00680) - 116197..116655 (-) 459 WP_058223015.1 hypothetical protein -
  N4R43_RS00685 (N4R43_00685) - 116812..117438 (-) 627 WP_004254567.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34842.95 Da        Isoelectric Point: 4.3396

>NTDB_id=729306 N4R43_RS00665 WP_317141326.1 112794..113732(-) (comYH) [Lactococcus lactis strain LJL7m20]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNADFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=729306 N4R43_RS00665 WP_317141326.1 112794..113732(-) (comYH) [Lactococcus lactis strain LJL7m20]
ATGGATATGGAAAAAGTAGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGATTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487