Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N4T37_RS06680 Genome accession   NZ_CP104350
Coordinates   890317..891135 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain 2021CK-01333     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885317..896135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T37_RS06665 (N4T37_06660) pilE 885534..885959 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  N4T37_RS06670 (N4T37_06665) pilY2 885956..886438 (-) 483 WP_001046422.1 type IV pilin protein Machinery gene
  N4T37_RS06675 (N4T37_06670) pilY1 886451..890305 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  N4T37_RS06680 (N4T37_06675) pilX 890317..891135 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4T37_RS06685 (N4T37_06680) pilW 891132..892133 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T37_RS06690 (N4T37_06685) pilV 892134..892694 (-) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T37_RS06695 (N4T37_06690) fimU 892688..893161 (-) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T37_RS06700 (N4T37_06695) ispH 893331..894281 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T37_RS06705 (N4T37_06700) gmk 894404..895033 (+) 630 WP_000015937.1 guanylate kinase -
  N4T37_RS06710 (N4T37_06705) rpoZ 895106..895384 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T37_RS06715 (N4T37_06710) - 895423..895553 (+) 131 Protein_912 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=728902 N4T37_RS06680 WP_000149377.1 890317..891135(-) (pilX) [Acinetobacter baumannii strain 2021CK-01333]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=728902 N4T37_RS06680 WP_000149377.1 890317..891135(-) (pilX) [Acinetobacter baumannii strain 2021CK-01333]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCGAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989