Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   N4T36_RS02020 Genome accession   NZ_CP104347
Coordinates   4095604..279 (+) Length   158 a.a.
NCBI ID   WP_001214057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4090604..5279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - fimU 4095604..279 (+) -4095324 - - Machinery gene

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 16863.51 Da        Isoelectric Point: 8.5355

>NTDB_id=728848 N4T36_RS02020 WP_001214057.1 4095604..279(+) (fimU) [Acinetobacter baumannii strain 2021CK-01332]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 0 bp        

>NTDB_id=728848 N4T36_RS02020 WP_001214057.1 4095604..279(+) (fimU) [Acinetobacter baumannii strain 2021CK-01332]

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994