Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   N4T35_RS01715 Genome accession   NZ_CP104342
Coordinates   362881..363882 (+) Length   333 a.a.
NCBI ID   WP_000079202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357881..368882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T35_RS01685 (N4T35_01685) - 359461..359591 (-) 131 Protein_322 hypothetical protein -
  N4T35_RS01690 (N4T35_01690) rpoZ 359630..359908 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T35_RS01695 (N4T35_01695) gmk 359981..360610 (-) 630 WP_000015937.1 guanylate kinase -
  N4T35_RS01700 (N4T35_01700) ispH 360733..361683 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T35_RS01705 (N4T35_01705) fimU 361853..362326 (+) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T35_RS01710 (N4T35_01710) pilV 362320..362880 (+) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T35_RS01715 (N4T35_01715) pilW 362881..363882 (+) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T35_RS01720 (N4T35_01720) pilX 363879..364697 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4T35_RS01725 (N4T35_01725) pilY1 364709..368563 (+) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35838.56 Da        Isoelectric Point: 6.1010

>NTDB_id=728811 N4T35_RS01715 WP_000079202.1 362881..363882(+) (pilW) [Acinetobacter baumannii strain 2021CK-01300]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMTRDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNVNFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGMNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=728811 N4T35_RS01715 WP_000079202.1 362881..363882(+) (pilW) [Acinetobacter baumannii strain 2021CK-01300]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCCAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGACACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATGTTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTATGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.498

100

0.985