Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   N4T40_RS04830 Genome accession   NZ_CP104335
Coordinates   917915..918442 (-) Length   175 a.a.
NCBI ID   WP_000695058.1    Uniprot ID   A0A3R9DHF3
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 912915..923442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS04810 (N4T40_04810) - 913104..913979 (-) 876 WP_000218798.1 hypothetical protein -
  N4T40_RS04815 (N4T40_04815) aroB 913995..915077 (-) 1083 WP_001194002.1 3-dehydroquinate synthase -
  N4T40_RS04820 (N4T40_04820) aroK 915106..915675 (-) 570 WP_000643712.1 shikimate kinase AroK -
  N4T40_RS04825 (N4T40_04825) pilQ 915687..917852 (-) 2166 WP_001017038.1 type IV pilus secretin PilQ family protein Machinery gene
  N4T40_RS04830 (N4T40_04830) pilP 917915..918442 (-) 528 WP_000695058.1 pilus assembly protein PilP Machinery gene
  N4T40_RS04835 (N4T40_04835) pilO 918453..919193 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  N4T40_RS04840 (N4T40_04840) pilN 919190..919831 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  N4T40_RS04845 (N4T40_04845) pilM 919831..920889 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19357.57 Da        Isoelectric Point: 9.0270

>NTDB_id=728725 N4T40_RS04830 WP_000695058.1 917915..918442(-) (pilP) [Acinetobacter baumannii strain 2021CK-01408]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQSPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=728725 N4T40_RS04830 WP_000695058.1 917915..918442(-) (pilP) [Acinetobacter baumannii strain 2021CK-01408]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGTCACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9DHF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

97.714

100

0.977
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709