Detailed information NTG0728383

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: N4Q44_RS09935
• Genome accession: NZ_CP104295
• Coordinates: 2114235..2114936 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain DETAB-C9
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2109235..2119936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4Q44_RS09905 (N4Q44_09905)	-	2109542..2109985 (-)	444	WP_045544205.1	SRPBCC family protein	-
N4Q44_RS09910 (N4Q44_09910)	tadA	2110055..2110558 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
N4Q44_RS09915 (N4Q44_09915)	-	2110565..2111689 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
N4Q44_RS09920 (N4Q44_09920)	ung	2111686..2112399 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
N4Q44_RS09925 (N4Q44_09925)	-	2112450..2113046 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
N4Q44_RS09930 (N4Q44_09930)	gspK	2113276..2114235 (-)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
N4Q44_RS09935 (N4Q44_09935)	xcpW	2114235..2114936 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
N4Q44_RS09940 (N4Q44_09940)	xcpV	2114936..2115316 (-)	381	WP_071210882.1	type II secretion system minor pseudopilin GspI	Machinery gene
N4Q44_RS09945 (N4Q44_09945)	-	2115306..2115860 (-)	555	WP_000841373.1	type II secretion system protein	-
N4Q44_RS09950 (N4Q44_09950)	-	2115870..2116478 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
N4Q44_RS09955 (N4Q44_09955)	-	2116516..2117289 (-)	774	WP_000497298.1	TatD family hydrolase	-
N4Q44_RS09960 (N4Q44_09960)	-	2117307..2117648 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
N4Q44_RS09965 (N4Q44_09965)	-	2117660..2118640 (-)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
N4Q44_RS09970 (N4Q44_09970)	kdsB	2118652..2119413 (-)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=728383 N4Q44_RS09935 WP_000594572.1 2114235..2114936(-) (xcpW) [Acinetobacter baumannii strain DETAB-C9]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=728383 N4Q44_RS09935 WP_000594572.1 2114235..2114936(-) (xcpW) [Acinetobacter baumannii strain DETAB-C9]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991