Detailed information NTG0728096

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N0D28_RS14105
• Genome accession: NZ_CP104213
• Coordinates: 2748073..2749239 (+)
• Length: 388 a.a.
• NCBI ID: WP_260560123.1
• Uniprot ID: -
• Organism: Deinococcus rubellus strain Ant6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2743073..2754239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0D28_RS14075 (N0D28_14075)	-	2743556..2744104 (-)	549	WP_260560117.1	HNH endonuclease	-
N0D28_RS14080 (N0D28_14080)	-	2744176..2744811 (-)	636	WP_260560118.1	MarC family protein	-
N0D28_RS14085 (N0D28_14085)	-	2745185..2745325 (-)	141	WP_260560119.1	hypothetical protein	-
N0D28_RS14090 (N0D28_14090)	-	2745578..2746237 (+)	660	WP_260560120.1	PIG-L deacetylase family protein	-
N0D28_RS14095 (N0D28_14095)	-	2746319..2747275 (+)	957	WP_260560121.1	ABC transporter ATP-binding protein	-
N0D28_RS14100 (N0D28_14100)	-	2747275..2748048 (+)	774	WP_260560122.1	ABC transporter permease	-
N0D28_RS14105 (N0D28_14105)	pilD	2748073..2749239 (+)	1167	WP_260560123.1	A24 family peptidase	Machinery gene
N0D28_RS14110 (N0D28_14110)	-	2749244..2750797 (-)	1554	WP_260560124.1	class A beta-lactamase-related serine hydrolase	-
N0D28_RS14115 (N0D28_14115)	-	2750910..2751896 (-)	987	WP_260560125.1	malate dehydrogenase	-
N0D28_RS14120 (N0D28_14120)	rplS	2752146..2752733 (-)	588	WP_376777632.1	50S ribosomal protein L19	-
N0D28_RS14135 (N0D28_14135)	-	2753402..2753584 (-)	183	WP_260560126.1	hypothetical protein	-
N0D28_RS14140 (N0D28_14140)	-	2753603..2753965 (-)	363	WP_260561915.1	RuvX/YqgF family protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 40355.64 Da
• Isoelectric Point: 6.2343

>NTDB_id=728096 N0D28_RS14105 WP_260560123.1 2748073..2749239(+) (pilD) [Deinococcus rubellus strain Ant6]
MNVDAFGVVVLFVLGLLIGSFTNVLIWRLPRGENIAFPPSHCPNCDHPLSPLDLVPVVSWAALGGKCRYCKAPISPRYPI
IELISGVAYAAIALLFPLSSFGTGVIGLCLLFTILLAASVIDFETYTIPDELTLPGTVIGLIFGAVNGAALSPLPHFEAA
LRGALMGAGVLVAISLLGGWVLRRFRERLYPELPIGYQQIALALFGGVLFGGLWGSWWTALAGGAALGVISTVVNAAARR
VIRIPELLTLGGSLLALAFFSARGSISLLTGLQGGLAAAGAISLLAGLYWWIGSRNDTADDDDAPGDPTAMGFGDVKLAA
VIGAFLGFERLLVALAVAVVVGAVLGLIQRFTGGENKLKFGPYLAIGAVVALLWGAAIIDAYTAYLGL

Nucleotide

• Length: 1167 bp

>NTDB_id=728096 N0D28_RS14105 WP_260560123.1 2748073..2749239(+) (pilD) [Deinococcus rubellus strain Ant6]
GTGAATGTGGACGCCTTCGGAGTAGTTGTTCTGTTCGTGCTGGGCTTACTCATCGGCTCGTTTACCAATGTGCTGATCTG
GCGCTTGCCGAGGGGCGAGAACATAGCCTTCCCGCCGAGCCACTGCCCCAACTGTGACCATCCGCTCAGCCCGCTCGACC
TGGTGCCGGTGGTGTCGTGGGCGGCCCTGGGCGGCAAGTGCCGCTACTGCAAGGCTCCTATCAGCCCGCGCTATCCCATC
ATCGAGCTGATCAGTGGGGTGGCCTACGCGGCCATTGCCCTGCTGTTCCCGTTGAGCAGCTTCGGCACGGGCGTGATTGG
GCTGTGCCTGCTGTTCACCATCTTGCTGGCGGCCTCGGTCATCGATTTCGAGACCTACACCATCCCCGACGAGCTGACCC
TACCGGGCACGGTCATTGGGCTGATCTTCGGGGCCGTCAACGGCGCGGCCCTCTCGCCCCTGCCCCATTTTGAAGCTGCC
CTGCGCGGGGCCCTGATGGGCGCGGGCGTGCTGGTGGCCATCAGTTTGCTGGGCGGCTGGGTGCTGCGGCGCTTTCGTGA
GCGCCTGTATCCCGAGTTGCCCATCGGTTACCAGCAGATCGCCCTGGCCCTGTTCGGCGGCGTGCTGTTCGGCGGGTTGT
GGGGCAGTTGGTGGACGGCCTTGGCGGGCGGCGCAGCGCTGGGCGTGATTTCCACTGTCGTCAACGCAGCAGCCCGCCGG
GTGATTCGCATTCCCGAACTGCTGACCCTGGGCGGCTCGCTGCTGGCACTGGCCTTTTTCAGCGCACGCGGCAGCATTTC
ACTGCTGACGGGCCTGCAAGGGGGCCTGGCCGCCGCCGGAGCCATCAGCCTGCTGGCAGGCCTGTACTGGTGGATCGGCA
GCCGCAATGACACCGCCGATGACGACGACGCCCCCGGCGACCCCACTGCAATGGGTTTCGGAGACGTCAAACTGGCCGCC
GTCATCGGGGCGTTCCTGGGCTTCGAGCGCCTGCTGGTGGCCCTGGCCGTCGCAGTGGTCGTCGGTGCTGTCCTGGGCCT
GATCCAGCGCTTCACGGGCGGCGAGAACAAACTGAAATTCGGGCCGTATCTGGCGATTGGCGCAGTGGTGGCGCTGCTGT
GGGGCGCAGCAATCATTGACGCCTACACAGCTTATCTGGGGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

• Type IV leader peptidase family (Peptidase_A24) (110-347)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.804	100	0.624