Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N0D28_RS04695 Genome accession   NZ_CP104213
Coordinates   882543..883139 (-) Length   198 a.a.
NCBI ID   WP_260561218.1    Uniprot ID   -
Organism   Deinococcus rubellus strain Ant6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877543..888139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0D28_RS04675 (N0D28_04675) - 879446..881332 (+) 1887 WP_260561214.1 ABC transporter ATP-binding protein -
  N0D28_RS04680 (N0D28_04680) - 881415..881759 (-) 345 WP_260561215.1 roadblock/LC7 domain-containing protein -
  N0D28_RS04685 (N0D28_04685) - 881749..882096 (-) 348 WP_260561216.1 roadblock/LC7 domain-containing protein -
  N0D28_RS04690 (N0D28_04690) - 882093..882440 (-) 348 WP_260561217.1 roadblock/LC7 domain-containing protein -
  N0D28_RS04695 (N0D28_04695) recR 882543..883139 (-) 597 WP_260561218.1 recombination mediator RecR Machinery gene
  N0D28_RS04700 (N0D28_04700) - 883162..883458 (-) 297 WP_260561219.1 YbaB/EbfC family nucleoid-associated protein -
  N0D28_RS04705 (N0D28_04705) - 883582..884403 (-) 822 WP_260561220.1 hypothetical protein -
  N0D28_RS04710 (N0D28_04710) - 884610..885620 (+) 1011 WP_260561221.1 Gfo/Idh/MocA family protein -
  N0D28_RS04715 (N0D28_04715) - 885847..886173 (+) 327 WP_260561222.1 non-heme iron oxygenase ferredoxin subunit -
  N0D28_RS04720 (N0D28_04720) - 886258..886533 (-) 276 WP_260561223.1 hypothetical protein -
  N0D28_RS04725 (N0D28_04725) - 886530..887090 (-) 561 WP_260561224.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21543.05 Da        Isoelectric Point: 5.3137

>NTDB_id=728086 N0D28_RS04695 WP_260561218.1 882543..883139(-) (recR) [Deinococcus rubellus strain Ant6]
MKYPPSLIALIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGVLLEAKRDLHTCPICFNITDADVCDVCADPARAQN
LICVVEEPGDVIAIEKSGEYNGLYHVLHGVISPMNGVGPDKLHLKPLLPRLQDGMEVILATGTTVEGEATAMYLQRLIEP
LGVVVSRIAYGLPVGGALEYADEVTLGRALSGRQRVTK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=728086 N0D28_RS04695 WP_260561218.1 882543..883139(-) (recR) [Deinococcus rubellus strain Ant6]
ATGAAGTACCCGCCCAGCCTCATCGCCCTGATCCGCGAACTCTCGCGCCTGCCGGGCATCGGCCCGAAAAGTGCCCAGCG
TCTGGCGTTCTACCTCTTCGAGCAGCCACGAGAGGATATCGAGCGCCTGGCGGGGGTGCTACTGGAAGCCAAGCGCGATC
TGCACACCTGCCCCATCTGTTTCAACATCACCGACGCCGACGTGTGCGACGTGTGCGCCGATCCGGCCAGGGCACAGAAC
CTGATCTGTGTGGTCGAGGAACCCGGCGACGTGATCGCCATCGAGAAGAGCGGAGAGTACAACGGTCTGTACCACGTCCT
GCACGGCGTCATCAGCCCGATGAACGGCGTCGGGCCGGACAAGCTGCACCTCAAGCCGCTGCTGCCCCGGCTCCAGGACG
GCATGGAAGTCATCCTAGCCACCGGCACCACCGTCGAGGGTGAGGCCACCGCCATGTACCTCCAGCGCCTCATCGAGCCG
CTGGGCGTCGTGGTGTCGCGTATCGCCTACGGCCTCCCGGTGGGCGGCGCGCTCGAATACGCCGACGAGGTGACGCTGGG
CCGGGCACTCAGCGGGCGGCAGCGGGTGACCAAGTAA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-169)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

83.838

100

0.838