Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N0D28_RS03040 Genome accession   NZ_CP104213
Coordinates   584833..585216 (+) Length   127 a.a.
NCBI ID   WP_260560923.1    Uniprot ID   -
Organism   Deinococcus rubellus strain Ant6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 579833..590216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0D28_RS03025 (N0D28_03025) - 581312..582311 (+) 1000 WP_260560920.1 IS630 family transposase -
  N0D28_RS03030 (N0D28_03030) - 582319..582762 (-) 444 WP_260560921.1 heme-binding protein -
  N0D28_RS03035 (N0D28_03035) - 582974..584647 (-) 1674 WP_260560922.1 long-chain fatty acid--CoA ligase -
  N0D28_RS03040 (N0D28_03040) comEA 584833..585216 (+) 384 WP_260560923.1 helix-hairpin-helix domain-containing protein Machinery gene
  N0D28_RS03045 (N0D28_03045) - 585216..585812 (+) 597 WP_260560924.1 ComEC/Rec2 family competence protein -
  N0D28_RS03050 (N0D28_03050) - 585867..586598 (+) 732 WP_260560925.1 GNAT family N-acetyltransferase -
  N0D28_RS03055 (N0D28_03055) - 586639..588279 (-) 1641 WP_260560926.1 GMC family oxidoreductase -
  N0D28_RS03060 (N0D28_03060) - 588467..588970 (-) 504 WP_260560927.1 multidrug DMT transporter -
  N0D28_RS03065 (N0D28_03065) - 589020..589550 (-) 531 WP_260560928.1 2'-5' RNA ligase family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13131.45 Da        Isoelectric Point: 9.1269

>NTDB_id=728085 N0D28_RS03040 WP_260560923.1 584833..585216(+) (comEA) [Deinococcus rubellus strain Ant6]
MPGSLSFERPLAALLSGLALVCGGWALWPALSPSPRLPVVTHAALPAPLSADPAPVYATTPSIRPLISGQLNLNTASEEQ
LEALPSIGPALAARLIAARPYRSLADLDAVRGVGPVLLAKLTPLVRF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=728085 N0D28_RS03040 WP_260560923.1 584833..585216(+) (comEA) [Deinococcus rubellus strain Ant6]
GTGCCAGGTTCCCTTTCCTTCGAGCGCCCGCTGGCGGCCCTGCTCAGCGGGCTGGCGCTCGTCTGCGGCGGCTGGGCGCT
GTGGCCCGCGCTGAGTCCATCGCCGCGCCTGCCGGTGGTAACCCACGCCGCCCTGCCCGCGCCGCTGAGTGCTGATCCCG
CGCCCGTGTATGCCACCACCCCCAGCATCAGGCCGCTGATTTCCGGCCAGCTCAACCTCAACACTGCCTCAGAAGAACAG
CTTGAAGCGTTGCCCAGTATCGGCCCGGCGCTGGCGGCCCGCCTGATCGCTGCCCGGCCCTACCGCAGCTTGGCCGACCT
CGACGCCGTGCGCGGGGTGGGGCCGGTGCTGCTTGCCAAGCTCACGCCGCTGGTCCGCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(70-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.349

99.213

0.559