Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N0D28_RS02605 Genome accession   NZ_CP104213
Coordinates   503628..504737 (-) Length   369 a.a.
NCBI ID   WP_260560845.1    Uniprot ID   -
Organism   Deinococcus rubellus strain Ant6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 498628..509737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0D28_RS02585 (N0D28_02585) - 500198..501241 (-) 1044 WP_260560841.1 hypothetical protein -
  N0D28_RS02590 (N0D28_02590) - 501341..502513 (-) 1173 WP_260560842.1 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein -
  N0D28_RS02595 (N0D28_02595) - 502731..503489 (+) 759 WP_260560843.1 DUF4394 domain-containing protein -
  N0D28_RS02600 (N0D28_02600) - 503446..503604 (+) 159 WP_260560844.1 hypothetical protein -
  N0D28_RS02605 (N0D28_02605) dprA 503628..504737 (-) 1110 WP_260560845.1 DNA-processing protein DprA Machinery gene
  N0D28_RS02615 (N0D28_02615) - 505446..505658 (-) 213 WP_260560846.1 hypothetical protein -
  N0D28_RS02620 (N0D28_02620) - 505926..506885 (+) 960 WP_260560847.1 roadblock/LC7 domain-containing protein -
  N0D28_RS02625 (N0D28_02625) - 506882..508522 (+) 1641 WP_260560848.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38345.98 Da        Isoelectric Point: 6.0981

>NTDB_id=728080 N0D28_RS02605 WP_260560845.1 503628..504737(-) (dprA) [Deinococcus rubellus strain Ant6]
MSCLDAPAPTPATDPDAELLALLTLRLTPGLGPRRIENLRRHFGSAGAVLAAPLTRLREVPGLDSKSLSAVGMPGVGVRA
EQELSRAREAGVQVLGRGLSGYPEALEALQDPPAALWVRGPDVPLEVVPRAVGLVGTRAASEHALRLTRQLSGDLARAGV
NIVSGLARGIDSAAHLAALDAGGVSTALLGCGVDVIYPAENARLATRLTLVSEYPMGTRPATHHFPQRNRLIAALSAGSV
IVEGDLKSGAMITATHALECGRTVFAVPGRANDPLSAGPHRLLREGAVLTEHAGDVLQELGWGEAPAAVNLDLTPEQALV
YTALPEIGAALLDDIVSRSGLDMSQAQLALTMLGLCGLVDEQGGRYLRR

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=728080 N0D28_RS02605 WP_260560845.1 503628..504737(-) (dprA) [Deinococcus rubellus strain Ant6]
ATGAGCTGCCTGGACGCCCCCGCACCCACCCCCGCCACCGACCCGGACGCCGAGTTGCTGGCCCTGCTGACGCTGCGCCT
GACGCCGGGACTGGGGCCGCGCCGCATCGAGAACCTGCGGCGGCATTTCGGCTCGGCCGGGGCAGTGCTGGCCGCACCCC
TGACACGCCTGCGCGAGGTGCCAGGCCTCGACAGCAAGTCGCTGAGCGCCGTCGGCATGCCGGGCGTGGGGGTGCGCGCC
GAGCAGGAACTCAGCCGCGCGCGGGAAGCCGGGGTGCAGGTGCTGGGCCGGGGACTCAGCGGCTACCCAGAAGCTCTGGA
AGCGCTGCAAGACCCGCCCGCCGCATTGTGGGTGCGCGGCCCCGACGTGCCGCTGGAGGTGGTGCCGCGCGCAGTGGGCC
TGGTCGGCACCCGCGCCGCGAGTGAGCACGCCCTCAGGCTCACACGCCAGCTCTCGGGCGACCTGGCCCGCGCCGGGGTC
AACATCGTCAGCGGCCTGGCACGCGGCATCGACAGCGCGGCGCACCTGGCGGCCCTGGACGCGGGCGGGGTCAGCACGGC
GCTGCTCGGCTGCGGGGTGGACGTGATCTACCCGGCGGAGAATGCCCGGCTGGCCACACGCCTCACCCTGGTCAGCGAAT
ACCCAATGGGCACCCGGCCCGCCACCCACCACTTTCCGCAGCGCAACCGTCTGATCGCCGCCCTGAGTGCGGGGTCGGTG
ATCGTCGAGGGCGACCTCAAGAGCGGCGCGATGATCACGGCGACGCACGCGCTGGAATGTGGGCGCACAGTGTTCGCGGT
GCCGGGCCGGGCGAACGATCCGCTCTCTGCCGGGCCGCACCGACTCCTGCGCGAAGGTGCGGTGCTGACCGAGCACGCGG
GCGACGTGCTGCAAGAACTCGGCTGGGGCGAGGCTCCTGCTGCTGTCAATCTGGACCTGACGCCCGAACAGGCACTGGTC
TACACGGCCCTGCCGGAAATCGGCGCAGCGCTACTCGACGACATTGTCTCGCGCAGCGGGCTGGACATGAGTCAGGCCCA
GCTCGCCCTGACGATGCTGGGCCTGTGCGGTCTGGTGGATGAGCAGGGCGGGCGCTACCTGCGGCGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(306-364)

DNA recombination-mediator protein A (DNA_processg_A)

(88-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.04

95.664

0.593